Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.19-201ENST00000362462 99 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 SNORD62.1-201ENST00000362541 86 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNU6-212P-201ENST00000362642 104 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNA5SP322-201ENST00000363617 119 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNU1-130P-201ENST00000363930 160 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 SNORD27-201ENST00000363981 72 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.274-201ENST00000364714 101 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNU1-89P-201ENST00000384592 164 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.539-201ENST00000384635 107 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL136372.1-201ENST00000403060 228 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNU2-71P-201ENST00000411395 189 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RPL30P2-201ENST00000414021 291 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC069213.2-201ENST00000420238 366 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 MRPS18BP2-201ENST00000434310 759 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RPL36AP6-201ENST00000435770 321 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 TRBV26-201ENST00000456572 344 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 snoU13.7-201ENST00000459220 104 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RPL21P8-201ENST00000465083 535 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC006517.1-201ENST00000480485 328 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC026979.1-201ENST00000492525 396 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC105758.1-201ENST00000506038 399 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 MIR2114-201ENST00000516645 80 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 RNU6-570P-201ENST00000517051 105 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC090615.1-201ENST00000577519 154 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AL731566.2-201ENST00000618971 317 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC39Q9UFE4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 ZNF72P-201ENST00000425869 1908 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1059P-201ENST00000363752 98 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 RNU6-188P-201ENST00000364207 107 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 RNU6-278P-201ENST00000390945 109 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL024474.1-201ENST00000404655 591 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 TMSB10P2-201ENST00000416049 131 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 NOTCH2P1-201ENST00000443481 624 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 RPS3AP12-201ENST00000443616 753 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AC083829.1-201ENST00000503756 657 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 SNORA14.1-201ENST00000516113 141 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL161423.1-201ENST00000613700 262 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 AL138825.1-201ENST00000618587 192 ntBASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
CCDC39Q9UFE4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC022893.2-201ENST00000564832 3296 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RNU6-545P-201ENST00000362681 104 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.297-201ENST00000364950 91 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.551-201ENST00000384661 102 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 MIR129-1-201ENST00000384972 72 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AL356387.2-201ENST00000422272 243 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RPEP3-201ENST00000425462 676 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms