Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RPL37P18-201ENST00000411602 243 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AL590383.1-201ENST00000428602 75 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 HMGB3P11-201ENST00000440127 604 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RPL32P28-201ENST00000443577 397 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RPL23AP31-201ENST00000456160 467 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNA5SP246-201ENST00000458909 119 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 snoU13.4-201ENST00000458916 104 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RPL21P41-201ENST00000459863 264 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RPL23AP62-201ENST00000463396 453 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RPS29P22-201ENST00000472363 168 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC078918.1-201ENST00000498515 228 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 HMGB3P15-201ENST00000507326 574 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC008526.1-201ENST00000509149 338 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RN7SKP24-201ENST00000515888 284 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RN7SKP13-201ENST00000515933 244 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNU6-914P-201ENST00000516749 109 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AP003072.1-201ENST00000531740 145 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC138761.3-201ENST00000579993 334 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC100830.2-201ENST00000581636 240 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC002545.1-201ENST00000592511 181 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC022432.1-201ENST00000595739 310 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 MIR15A-201ENST00000607334 83 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AL355810.1-201ENST00000614629 552 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 MIR423-201ENST00000362201 94 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 RNU6-371P-201ENST00000364283 108 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 RNU1-132P-201ENST00000364300 164 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 SNORD42.2-201ENST00000365570 69 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.534-201ENST00000384599 112 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 MIR514A1-201ENST00000385133 98 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 SNORA3C-201ENST00000408792 125 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 NDUFB4P7-201ENST00000423198 363 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 snoU13.1-201ENST00000459157 104 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 RPS20P22-201ENST00000473700 357 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 RPL7P43-201ENST00000478876 753 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC026801.1-201ENST00000497178 464 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 IGKV2-38-201ENST00000517443 247 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 COPS8P3-201ENST00000526024 482 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 MIR5692C1-201ENST00000585309 91 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AL356218.2-201ENST00000605264 187 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC084781.2-201ENST00000615568 161 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AL391261.4-201ENST00000616012 481 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 AC010378.1-201ENST00000619270 362 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 OR52H1-202ENST00000641796 1061 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 HSPA8P4-201ENST00000511877 1920 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 ZNF519P1-201ENST00000449011 1626 ntBASIC3.69□□□□□ -1.82
VSX1Q9NZR4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.69□□□□□ -1.82
VSX1Q9NZR4 ZNF962P-201ENST00000443465 3140 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.146-201ENST00000363549 102 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.202-201ENST00000364083 110 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 SNORA4.3-201ENST00000365564 137 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 RNU6-214P-201ENST00000384130 107 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 MIR559-201ENST00000385188 96 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 MIR548P-201ENST00000408336 84 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 RNA5SP306-201ENST00000411087 107 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 RNU6-954P-201ENST00000411355 107 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC092809.3-201ENST00000415453 231 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC005019.1-201ENST00000436455 431 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 TXNP1-201ENST00000441872 371 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 BRK1P2-201ENST00000442875 223 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 145.3 ms