Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 TRAV11-201ENST00000539512 339 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 RPS3AP4-201ENST00000555161 764 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 LINC00933-203ENST00000559812 219 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 SULT1C2P1-202ENST00000562418 459 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 MIR3122-201ENST00000577243 73 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 OR1M4P-201ENST00000589199 287 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AC078899.2-201ENST00000595282 212 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 AC020658.4-201ENST00000613987 684 ntBASIC1.36□□□□□ -2.19
SCN3AQ9NY46 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SCN3AQ9NY46 Y_RNA.238-201ENST00000364441 102 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RNU6-1078P-201ENST00000364522 103 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RNU6-650P-201ENST00000365658 111 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC074117.2-201ENST00000417130 397 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 VN1R42P-201ENST00000424651 344 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 MTND2P5-201ENST00000432656 1006 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AL714022.1-201ENST00000439897 151 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RPL26P6-201ENST00000440913 438 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 GPM6BP3-201ENST00000442797 145 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC116337.2-201ENST00000477662 156 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RNA5SP135-201ENST00000517019 125 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC103987.3-201ENST00000582071 292 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AP003973.1-201ENST00000604639 691 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC004067.1-201ENST00000608733 700 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RMST_6.1-201ENST00000611980 203 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC073968.1-201ENST00000618594 637 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 SNORA46.1-201ENST00000391069 153 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 MIR1287-201ENST00000408492 90 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 RNU2-68P-201ENST00000410878 191 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 Z85995.1-201ENST00000415547 335 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 PGBD4P6-201ENST00000421501 610 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 PIGFP3-201ENST00000441918 722 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 ANKRD26P4-201ENST00000455755 950 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AP005435.4-201ENST00000529514 284 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC006213.5-201ENST00000619673 288 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 AC068057.2-201ENST00000624047 895 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 MIR4275-201ENST00000636486 87 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 ZNF663P-202ENST00000641770 1131 ntBASIC1.35□□□□□ -2.19
SCN3AQ9NY46 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.35□□□□□ -2.19
SCN3AQ9NY46 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 RNU6-1083P-201ENST00000384022 107 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 MIR16-1-201ENST00000385271 89 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AL512604.1-201ENST00000404812 257 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC246680.2-201ENST00000422106 389 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 TRIM60P13-201ENST00000432350 1283 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 ZFAND6P1-201ENST00000434138 605 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC007000.2-201ENST00000442564 487 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC023790.1-201ENST00000482174 347 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 SNORA31.18-201ENST00000517043 134 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AP003033.1-201ENST00000527244 415 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC010186.2-204ENST00000537668 439 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 AC098657.3-201ENST00000620434 263 ntBASIC1.34□□□□□ -2.19
SCN3AQ9NY46 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.34□□□□□ -2.19
SCN3AQ9NY46 MFSD8-213ENST00000641134 1327 ntBASIC1.34□□□□□ -2.2
SCN3AQ9NY46 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.34□□□□□ -2.2
SCN3AQ9NY46 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
SCN3AQ9NY46 OR4G11P-202ENST00000642116 1414 ntBASIC1.34□□□□□ -2.2
SCN3AQ9NY46 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC016769.3-201ENST00000396562 315 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RN7SKP158-201ENST00000410453 326 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL030996.1-201ENST00000411430 235 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 ZNF90P2-204ENST00000419323 1075 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC007098.1-201ENST00000420122 367 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL109913.1-201ENST00000421173 514 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 FAM204CP-201ENST00000424489 642 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 THAP5P1-201ENST00000439089 262 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 BNIP3P2-201ENST00000441221 577 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RPL31P41-201ENST00000477967 372 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC023141.11-201ENST00000508864 202 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 COL6A4P2-205ENST00000509855 506 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RNA5SP61-201ENST00000516453 100 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms