Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AL590084.2-201ENST00000401481 382 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AL591416.1-201ENST00000404015 867 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU2-49P-201ENST00000410666 184 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MTND1P21-201ENST00000412991 285 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC011753.1-201ENST00000451001 220 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AL109933.2-201ENST00000452651 260 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RPL12P25-201ENST00000455592 494 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-390P-201ENST00000516259 103 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP24-201ENST00000516478 95 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 SCARNA11.3-201ENST00000517276 130 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 DUXAP1-201ENST00000556632 463 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MTND4P33-201ENST00000556706 766 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AGGF1P5-201ENST00000567900 919 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MIR3616-201ENST00000584070 92 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 VN1R82P-201ENST00000601481 356 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC011458.1-201ENST00000604034 617 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MIR6766-201ENST00000622641 72 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 AP000553.5-201ENST00000641933 54 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP68-201ENST00000363885 119 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNU4-52P-201ENST00000384209 138 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-584P-201ENST00000410350 95 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL359704.1-201ENST00000411586 781 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL451054.2-201ENST00000420896 202 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL109913.1-201ENST00000421173 514 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 CR769776.1-201ENST00000441254 787 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 FAM103A2P-201ENST00000444122 354 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RPL23AP35-201ENST00000451906 501 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 MTND1P9-201ENST00000453775 944 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC004924.1-201ENST00000480160 781 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP148-201ENST00000516527 94 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNU1-40P-201ENST00000516816 164 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 RNU1-97P-201ENST00000516872 164 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 SNORA31.18-201ENST00000517043 134 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 HMGN1P28-201ENST00000521340 364 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC021269.2-201ENST00000532318 330 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 MTCO2P15-201ENST00000532655 656 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC135628.1-201ENST00000568867 534 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC002545.1-201ENST00000592511 181 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC245884.10-201ENST00000597355 337 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC021171.1-201ENST00000603137 706 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL161729.4-201ENST00000604650 476 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 SNORD14A-201ENST00000606526 91 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC013562.2-201ENST00000611632 603 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC008498.1-201ENST00000613012 531 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC013476.2-201ENST00000614456 459 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 SDR42E1P2-201ENST00000614861 481 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC022960.3-201ENST00000619794 441 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AL607023.1-201ENST00000620045 248 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 AC012150.2-201ENST00000621300 544 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 PCMTD1P7-201ENST00000634506 357 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 MTND1P37-201ENST00000636562 264 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 ZNF658B-202ENST00000615961 3375 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 MTND5P33-201ENST00000571250 1450 ntBASIC2.01□□□□□ -2.09
EXOSC4Q9NPD3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2□□□□□ -2.09
EXOSC4Q9NPD3 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2□□□□□ -2.09
EXOSC4Q9NPD3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
EXOSC4Q9NPD3 SNORA3A-201ENST00000364113 130 ntBASIC2□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP138-201ENST00000365098 114 ntBASIC2□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-140P-201ENST00000384566 108 ntBASIC2□□□□□ -2.09
EXOSC4Q9NPD3 RNU4-72P-201ENST00000410754 173 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 261.2 ms