Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
RPAP1Q9BWH6 SNORA23-201ENST00000365128 182 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 RNU2-2P-201ENST00000410396 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 RNU6-516P-201ENST00000411381 104 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 MTND1P21-201ENST00000412991 285 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC099548.1-201ENST00000421443 426 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC092047.1-201ENST00000424997 240 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL031659.1-201ENST00000447075 539 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL118520.1-201ENST00000450770 291 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 USP9YP10-201ENST00000454868 628 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 ATG12P2-201ENST00000456830 416 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC116337.1-201ENST00000509680 687 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC087373.1-201ENST00000524920 491 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AP002748.2-201ENST00000528671 348 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC121758.2-201ENST00000553271 193 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC005951.2-201ENST00000576282 495 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC090186.1-201ENST00000605991 572 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 RNU4-5P-201ENST00000607255 135 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC024560.3-201ENST00000608482 349 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL161734.1-201ENST00000609720 557 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.15-201ENST00000611544 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.16-201ENST00000613119 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.12-201ENST00000613778 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.20-201ENST00000613956 192 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC013476.2-201ENST00000614456 459 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.9-201ENST00000615427 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.11-201ENST00000616345 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.2-201ENST00000616535 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.3-201ENST00000617785 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.19-201ENST00000618602 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 RNU2-1-201ENST00000618664 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.6-201ENST00000619225 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.5-201ENST00000619465 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC022306.3-201ENST00000619930 550 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 U2.10-201ENST00000620268 191 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC068880.5-201ENST00000624331 290 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC010608.3-201ENST00000625048 527 ntBASIC2.59□□□□□ -2
RPAP1Q9BWH6 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.59□□□□□ -2
RPAP1Q9BWH6 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
RPAP1Q9BWH6 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.58□□□□□ -2
RPAP1Q9BWH6 DDX10P1-201ENST00000448545 1933 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AL139276.1-201ENST00000311910 1001 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 RNU4-92P-201ENST00000363783 136 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 RNU6-777P-201ENST00000364265 104 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 SNORA11.4-201ENST00000408823 129 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AL354692.1-201ENST00000423044 315 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC092648.1-201ENST00000425870 423 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 UBE2V1P13-201ENST00000436983 439 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 CBWD4P-201ENST00000445695 655 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC092155.2-201ENST00000454675 477 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 RNU6-840P-201ENST00000517275 65 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 RNU1-104P-201ENST00000517280 175 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 HMGN1P28-201ENST00000521340 364 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC090888.1-201ENST00000561335 1141 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC016727.1-205ENST00000605437 569 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.58□□□□□ -2
RPAP1Q9BWH6 AL391834.2-201ENST00000609982 546 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC103710.1-201ENST00000610003 901 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AC073308.1-201ENST00000623696 305 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 AL138713.1-201ENST00000624026 2130 ntBASIC2.58□□□□□ -2
RPAP1Q9BWH6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
RPAP1Q9BWH6 RNU6-1159P-201ENST00000362933 107 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 RNU1-39P-201ENST00000383897 165 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 U8.13-201ENST00000390842 128 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 RNU6-1242P-201ENST00000391052 103 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 AC005005.2-201ENST00000420779 380 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 COX7BP2-201ENST00000437976 242 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 BNIP3P2-201ENST00000441221 577 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 BMI1P1-201ENST00000445879 941 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 DDX3P2-201ENST00000446138 111 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 RPL23AP7-203ENST00000449021 469 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 PAXBP1P1-201ENST00000449315 447 ntBASIC2.57□□□□□ -2
RPAP1Q9BWH6 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.57□□□□□ -2
RPAP1Q9BWH6 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms