Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SPA17P1-201ENST00000416656 452 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 MTCO1P39-201ENST00000426148 480 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 RPL39P40-201ENST00000445481 146 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.04□□□□□ -1.92
USP28Q96RU2 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
USP28Q96RU2 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.04□□□□□ -1.92
USP28Q96RU2 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.04□□□□□ -1.92
USP28Q96RU2 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 RNU6-720P-201ENST00000516363 108 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNU6-528P-201ENST00000516926 100 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 RNU6-56P-201ENST00000516986 93 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 AP003467.2-201ENST00000520175 319 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 AC107934.1-201ENST00000522215 217 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.04□□□□□ -1.92
USP28Q96RU2 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 AC137800.2-201ENST00000574375 120 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 AC090578.1-201ENST00000604955 591 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 NDUFA8P1-201ENST00000605525 367 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 AC015540.1-201ENST00000615828 501 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
USP28Q96RU2 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.04□□□□□ -1.92
USP28Q96RU2 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.04□□□□□ -1.92
USP28Q96RU2 TAB3P1-202ENST00000452645 1634 ntBASIC3.04□□□□□ -1.92
USP28Q96RU2 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP28Q96RU2 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
USP28Q96RU2 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.03□□□□□ -1.92
USP28Q96RU2 RNU6-1155P-201ENST00000363554 107 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
USP28Q96RU2 U3.20-201ENST00000390909 217 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RNU6-192P-201ENST00000391253 100 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 FCF1P10-201ENST00000407590 479 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 SNORA11-201ENST00000408789 128 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AL353777.1-201ENST00000425552 326 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 C8orf59P1-201ENST00000429930 303 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC087499.2-201ENST00000432861 149 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC009961.2-201ENST00000435771 251 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 MTND1P34-201ENST00000438556 671 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RPL23AP58-201ENST00000440453 469 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 TPT1P14-201ENST00000448018 505 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AP1S2P1-201ENST00000457344 379 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC133134.1-201ENST00000466800 359 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RPS27AP9-201ENST00000477681 438 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC138853.1-201ENST00000503549 823 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC109464.2-201ENST00000510242 943 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 RNU6-798P-201ENST00000516912 103 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RNU6-201P-201ENST00000517100 61 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AP000907.2-201ENST00000530827 353 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.03□□□□□ -1.92
USP28Q96RU2 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.03□□□□□ -1.92
USP28Q96RU2 AL356432.3-201ENST00000568952 465 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.03□□□□□ -1.92
USP28Q96RU2 MIR3118-1-201ENST00000581787 76 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 GLUD1P4-201ENST00000590914 418 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 NUTF2P8-201ENST00000604593 363 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC093732.2-201ENST00000607950 274 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 BX664608.1-201ENST00000610519 487 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AP001506.1-201ENST00000615444 211 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC091953.2-201ENST00000623979 160 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC110994.2-201ENST00000635481 492 ntBASIC3.03□□□□□ -1.92
USP28Q96RU2 AC009902.3-201ENST00000606235 2172 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USP28Q96RU2 RNU4-1-201ENST00000363925 141 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 RNY4P16-201ENST00000364768 94 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 Y_RNA.516-201ENST00000384541 124 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 Y_RNA.619-201ENST00000410951 90 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AF274854.1-201ENST00000413236 615 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 BX295541.1-201ENST00000417774 250 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AL137014.1-201ENST00000420490 1226 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL451062.2-201ENST00000427515 271 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 ISCA1P6-201ENST00000427740 390 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC104850.1-201ENST00000435940 476 ntBASIC3.02□□□□□ -1.93
USP28Q96RU2 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.02□□□□□ -1.93
USP28Q96RU2 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.02□□□□□ -1.93
USP28Q96RU2 RAC1P7-201ENST00000445367 377 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms