Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TPT1P14-201ENST00000448018 505 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 RNU7-125P-201ENST00000458760 62 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 RPL37P25-201ENST00000507308 276 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 MTND5P13-201ENST00000513046 1079 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 RNU6-927P-201ENST00000516199 100 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 RNU6-390P-201ENST00000516259 103 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 MIR3200-201ENST00000580767 85 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 BX664608.1-201ENST00000610519 487 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC131159.1-201ENST00000621854 213 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AL356266.1-201ENST00000623311 483 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS39Q96JC1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC110491.1-201ENST00000562191 2010 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC010889.1-201ENST00000566193 2666 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS39Q96JC1 SNORA67.1-201ENST00000364749 141 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 RNU1-100P-201ENST00000365255 165 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AL139095.1-201ENST00000404326 391 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AL359704.1-201ENST00000411586 781 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 ELOCP14-201ENST00000428070 331 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 UBE2D3P1-201ENST00000436669 444 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 ELOCP7-201ENST00000439968 331 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC008481.1-201ENST00000463278 396 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC068587.2-201ENST00000478386 781 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 LINC00888-204ENST00000487386 421 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 RPS27AP10-201ENST00000496103 208 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 OR4R1P-201ENST00000529879 463 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC135628.1-201ENST00000568867 534 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC007151.1-201ENST00000572774 483 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 ISCA1P3-201ENST00000577104 373 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS39Q96JC1 AL451007.1-201ENST00000595491 289 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 ATP1B3P1-201ENST00000605365 821 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC004805.2-201ENST00000605382 482 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AC005000.2-201ENST00000605468 310 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 AL391813.2-201ENST00000609113 322 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 FO624990.1-201ENST00000636373 85 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 ELF2P3-201ENST00000445099 1506 ntBASIC2.66□□□□□ -1.98
VPS39Q96JC1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.65□□□□□ -1.98
VPS39Q96JC1 AC092125.1-201ENST00000562568 1995 ntBASIC2.65□□□□□ -1.98
VPS39Q96JC1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
VPS39Q96JC1 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS39Q96JC1 Y_RNA.18-201ENST00000362461 102 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 RNU1-112P-201ENST00000364401 164 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 RPL17P12-201ENST00000413391 526 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 BTF3L4P3-201ENST00000418879 476 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AL135938.1-201ENST00000443141 297 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 RPL7P36-201ENST00000444633 681 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 GDI2P2-201ENST00000445131 608 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 CACYBPP2-201ENST00000453625 678 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC034222.1-201ENST00000494052 532 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC023141.11-201ENST00000508864 202 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 RNU6-759P-201ENST00000516740 103 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC100870.1-201ENST00000522035 505 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 MTND3P12-201ENST00000559068 328 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AP000787.2-201ENST00000604432 568 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC135507.2-201ENST00000612443 309 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC007998.5-201ENST00000622938 237 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 AC120349.3-201ENST00000624377 529 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 PCMTD1P7-201ENST00000634506 357 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 MIR3199-2-201ENST00000636243 86 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS39Q96JC1 MTND5P29-201ENST00000458676 1807 ntBASIC2.65□□□□□ -1.99
VPS39Q96JC1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS39Q96JC1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS39Q96JC1 Y_RNA.97-201ENST00000363094 102 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 432.3 ms