Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC093106.2-201ENST00000428212 385 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 CR383656.7-201ENST00000548164 174 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC068338.1-201ENST00000565567 176 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC103987.3-201ENST00000582071 292 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC007229.1-201ENST00000590455 412 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 Y_RNA.60-201ENST00000362831 98 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RNU6-712P-201ENST00000410558 100 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 snoU13.28-201ENST00000459235 104 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RNA5SP330-201ENST00000517096 96 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 MIR3935-201ENST00000583472 104 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC009090.3-201ENST00000616553 565 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL109659.3-201ENST00000624985 950 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 MIR373-201ENST00000362273 69 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RNU6-444P-201ENST00000383988 108 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 MIR520E-201ENST00000384867 87 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 OR6K5P-201ENST00000447050 945 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL583843.1-201ENST00000456070 346 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RPS27P23-201ENST00000487608 251 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC005034.5-201ENST00000604219 466 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC138473.1-201ENST00000605717 526 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL031601.2-202ENST00000622650 282 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC012640.5-201ENST00000623897 319 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL356118.1-201ENST00000635272 1078 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RNU6-461P-201ENST00000364195 107 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 CIR1P3-201ENST00000405137 479 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC018630.2-202ENST00000422992 927 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC087588.1-201ENST00000462203 316 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 HMGB3P3-201ENST00000510526 400 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC091965.2-201ENST00000512324 613 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 RNU6-889P-201ENST00000517189 103 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC025918.2-201ENST00000558683 763 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC025588.4-201ENST00000615802 908 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 AC073592.7-201ENST00000623659 507 ntBASIC0.45□□□□□ -2.34
SYNE1Q8NF91 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 U3.29-201ENST00000391296 212 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 TPTE2P6-202ENST00000445572 1007 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 TPT1P14-201ENST00000448018 505 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC104164.3-201ENST00000467363 1258 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-1282P-201ENST00000516735 96 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC021749.1-201ENST00000604322 607 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AL355472.4-201ENST00000610233 626 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 MIR6078-201ENST00000611069 100 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 U8.1-201ENST00000362843 134 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-819P-201ENST00000364116 107 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-374P-201ENST00000364146 108 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 Y_RNA.258-201ENST00000364613 105 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU1-93P-201ENST00000364704 169 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-1072P-201ENST00000384703 107 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-443P-201ENST00000384780 107 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 MIR525-201ENST00000384978 85 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AL929288.2-201ENST00000446368 407 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU1-40P-201ENST00000516816 164 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU1-97P-201ENST00000516872 164 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC024614.2-201ENST00000577584 372 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC012254.4-201ENST00000588843 273 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC096772.1-201ENST00000609146 564 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AL353770.2-201ENST00000620024 78 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU5A-1-201ENST00000362698 116 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RNU6-629P-201ENST00000384061 103 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AC241584.1-201ENST00000438469 1241 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 RABEPKP1-201ENST00000440529 1026 ntBASIC0.44□□□□□ -2.34
SYNE1Q8NF91 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.44□□□□□ -2.34
SYNE1Q8NF91 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms