Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC007938.3-201ENST00000604965 623 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC133104.2-201ENST00000615272 193 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC087588.2-201ENST00000617667 426 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC091925.2-201ENST00000625059 256 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC068254.2-201ENST00000623938 3577 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 API5P2-201ENST00000397055 1498 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNA5SP50-201ENST00000363731 107 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-188P-201ENST00000364207 107 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 SNORD116-11-201ENST00000383882 92 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-432P-201ENST00000384196 109 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 MIR513A2-201ENST00000385249 127 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-907P-201ENST00000390924 102 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNA5SP424-201ENST00000390988 115 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 U3.29-201ENST00000391296 212 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 UBE2V1P2-201ENST00000397758 440 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-387P-201ENST00000411331 105 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 MTCO3P10-201ENST00000455912 772 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC135721.1-201ENST00000497954 479 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 SNORD116-26-201ENST00000516006 96 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-976P-201ENST00000516086 111 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC009902.1-201ENST00000519351 183 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AP003122.3-201ENST00000526316 255 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AL117187.1-201ENST00000555482 181 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AL160281.1-201ENST00000605307 311 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC012443.1-201ENST00000605605 231 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 UBE3AP2-201ENST00000429033 2259 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 AC066616.2-201ENST00000559334 1481 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 ZNF734P-201ENST00000419494 1534 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.86□□□□□ -1.63
USHBP1Q8N6Y0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-954P-201ENST00000411355 107 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RPL30P3-201ENST00000424262 333 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 SKA2P1-201ENST00000425592 390 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC011742.1-201ENST00000431448 434 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC005094.1-201ENST00000440420 368 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 HMGB3P21-201ENST00000452483 547 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC022795.1-201ENST00000473808 480 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC079140.5-201ENST00000507882 310 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-27P-201ENST00000516146 107 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1092P-201ENST00000516955 87 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RN7SKP295-201ENST00000517264 153 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 HMGN1P28-201ENST00000521340 364 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC138761.3-201ENST00000579993 334 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC023043.2-201ENST00000589678 1026 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AL008729.2-201ENST00000606393 473 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC012409.4-201ENST00000612923 249 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AC083806.3-201ENST00000614016 455 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 MIR8058-201ENST00000615737 89 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AL713922.2-201ENST00000619384 716 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 AP000553.6-201ENST00000641242 118 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 MTND4P1-201ENST00000457501 1466 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 TPTE2P4-201ENST00000258589 1605 ntBASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USHBP1Q8N6Y0 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 GABPAP-201ENST00000419271 1356 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.452-201ENST00000384202 108 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 SNORD51-201ENST00000384320 80 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 MIR568-201ENST00000385036 95 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms