Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC098826.3-201ENST00000603823 466 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC091965.5-201ENST00000624785 342 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AL136313.1-201ENST00000624804 202 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 AC004520.1-201ENST00000608362 1413 ntBASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.74□□□□□ -1.97
HDDC3Q8N4P3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC010889.1-201ENST00000566193 2666 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 MIR26A1-201ENST00000362205 77 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 RNU6-433P-201ENST00000363216 104 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 RNU6-931P-201ENST00000363850 107 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 RNU5A-8P-201ENST00000364102 114 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC104651.1-201ENST00000427559 735 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 RPL36AP53-201ENST00000432891 316 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC098831.1-201ENST00000440661 216 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 CR769776.1-201ENST00000441254 787 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC104389.3-201ENST00000445629 235 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC003982.1-202ENST00000469928 248 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC107626.1-201ENST00000471084 183 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 EEF1A1P37-201ENST00000522748 715 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 MTATP6P15-201ENST00000527233 835 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 DEFB108A-201ENST00000530110 222 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC024619.4-201ENST00000580924 316 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC012119.1-201ENST00000603184 222 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AP000403.1-201ENST00000603349 851 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AL356280.1-201ENST00000603614 379 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AL355598.1-201ENST00000604169 202 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AL161798.1-201ENST00000604630 131 ntBASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.73□□□□□ -1.97
HDDC3Q8N4P3 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 RPL9P7-201ENST00000330965 580 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 VTRNA1-1-201ENST00000363120 99 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 RNU6-1083P-201ENST00000384022 107 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 MIR181A2-201ENST00000384863 110 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 FCF1P1-201ENST00000432690 571 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 UBE2FP3-201ENST00000436366 524 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 ADAM3A-203ENST00000461344 2157 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC008716.1-201ENST00000511084 513 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 RNU1-41P-201ENST00000516161 162 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 RNU1-48P-201ENST00000516400 162 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP148-201ENST00000516527 94 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 SCARNA1-201ENST00000517138 166 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 MRPS36P5-201ENST00000551909 298 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AL049838.1-201ENST00000563647 981 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC008277.2-201ENST00000605196 797 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 OR10AB1P-201ENST00000609613 938 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC090970.3-201ENST00000612566 866 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AL607023.1-201ENST00000620045 248 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 AP002791.1-201ENST00000623291 381 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 LRRC77P-213ENST00000637727 880 ntBASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
HDDC3Q8N4P3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.71□□□□□ -1.97
HDDC3Q8N4P3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 UBE2L2-201ENST00000254302 429 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 RNU6-1284P-201ENST00000363701 100 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 RNU6-253P-201ENST00000384730 105 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL356057.3-201ENST00000402607 340 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL021407.1-201ENST00000404531 386 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 SSR1P2-201ENST00000415208 787 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL451074.5-201ENST00000415894 435 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 SKA2P1-201ENST00000425592 390 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AC112220.1-201ENST00000434628 355 ntBASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.71□□□□□ -1.98
HDDC3Q8N4P3 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms