Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC068724.3-201ENST00000625906 87 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 AL356489.2-201ENST00000566968 3528 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 AC074029.4-201ENST00000624796 1859 ntBASIC3.43□□□□□ -1.86
HOXA4Q00056 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA4Q00056 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA4Q00056 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXA4Q00056 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
HOXA4Q00056 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXA4Q00056 RNA5SP388-201ENST00000362584 119 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 SNORA63C-201ENST00000364578 129 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 RNU6-1279P-201ENST00000383917 103 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 Y_RNA.395-201ENST00000383945 109 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 Y_RNA.445-201ENST00000384168 102 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 RNU6-738P-201ENST00000384531 106 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 MIR514A1-201ENST00000385133 98 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 RNU6-308P-201ENST00000390957 107 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC063979.1-201ENST00000415539 377 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC091390.3-201ENST00000426478 338 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AL592045.1-201ENST00000429867 352 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 RPL23AP69-201ENST00000431134 458 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 SNAP23P1-201ENST00000433229 246 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 HMGN2P21-201ENST00000447764 270 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXA4Q00056 Y_RNA.653-201ENST00000459091 95 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 SUMO2P6-201ENST00000505273 288 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 AC079140.5-201ENST00000507882 310 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 MTND3P25-201ENST00000509243 135 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 APOOP4-201ENST00000513530 597 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXA4Q00056 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 MED28P6-201ENST00000558776 231 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC012182.1-201ENST00000570133 895 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXA4Q00056 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA4Q00056 MIR6128-201ENST00000615528 109 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 RNA5SP196-201ENST00000625967 102 ntBASIC3.42□□□□□ -1.86
HOXA4Q00056 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXA4Q00056 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA4Q00056 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.42□□□□□ -1.86
HOXA4Q00056 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA4Q00056 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA4Q00056 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA4Q00056 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA4Q00056 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.41□□□□□ -1.86
HOXA4Q00056 Y_RNA.202-201ENST00000364083 110 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 Y_RNA.473-201ENST00000384333 102 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 RNU6-310P-201ENST00000384655 107 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 RPS26P8-201ENST00000393490 348 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 Y_RNA.646-201ENST00000410980 101 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AL117339.2-201ENST00000430475 180 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC073063.1-201ENST00000434352 607 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AF228730.2-201ENST00000438784 848 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC008264.1-201ENST00000447612 367 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AL360271.2-201ENST00000447710 161 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 RPS24P6-201ENST00000452670 400 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 ELOCP24-201ENST00000456370 334 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 RPL37P6-201ENST00000460682 294 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC130509.1-201ENST00000464158 433 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC006517.1-201ENST00000480485 328 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA4Q00056 MTCYBP40-201ENST00000509390 1135 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC108043.1-201ENST00000512696 574 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 AC026402.1-201ENST00000513642 170 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 RNA5SP154-201ENST00000516193 111 ntBASIC3.41□□□□□ -1.86
HOXA4Q00056 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA4Q00056 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms