Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU6-413P-201ENST00000384115 107 ntBASIC2.58□□□□□ -2
MSH6P52701 MIR493-201ENST00000385254 89 ntBASIC2.58□□□□□ -2
MSH6P52701 RNU6-952P-201ENST00000391164 108 ntBASIC2.58□□□□□ -2
MSH6P52701 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
MSH6P52701 MIR1294-201ENST00000408503 142 ntBASIC2.58□□□□□ -2
MSH6P52701 OR10R1P-201ENST00000441524 1141 ntBASIC2.58□□□□□ -2
MSH6P52701 AL121871.1-201ENST00000443413 436 ntBASIC2.58□□□□□ -2
MSH6P52701 ARPC3P5-201ENST00000448802 534 ntBASIC2.58□□□□□ -2
MSH6P52701 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.58□□□□□ -2
MSH6P52701 RNU7-136P-201ENST00000458819 69 ntBASIC2.58□□□□□ -2
MSH6P52701 AC097493.1-201ENST00000463958 372 ntBASIC2.58□□□□□ -2
MSH6P52701 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.58□□□□□ -2
MSH6P52701 AC022483.1-201ENST00000514020 567 ntBASIC2.58□□□□□ -2
MSH6P52701 AC093677.1-201ENST00000514414 678 ntBASIC2.58□□□□□ -2
MSH6P52701 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH6P52701 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
MSH6P52701 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
MSH6P52701 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
MSH6P52701 Z82209.1-201ENST00000422141 2135 ntBASIC2.57□□□□□ -2
MSH6P52701 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
MSH6P52701 RNA5SP393-201ENST00000363423 117 ntBASIC2.57□□□□□ -2
MSH6P52701 SNORD56.5-201ENST00000364281 72 ntBASIC2.57□□□□□ -2
MSH6P52701 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.57□□□□□ -2
MSH6P52701 RNA5SP38-201ENST00000410750 119 ntBASIC2.57□□□□□ -2
MSH6P52701 AC004965.1-201ENST00000413033 213 ntBASIC2.57□□□□□ -2
MSH6P52701 EIF1AXP1-201ENST00000419267 435 ntBASIC2.57□□□□□ -2
MSH6P52701 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.57□□□□□ -2
MSH6P52701 RPL27AP8-201ENST00000424277 446 ntBASIC2.57□□□□□ -2
MSH6P52701 USP9YP11-201ENST00000427537 717 ntBASIC2.57□□□□□ -2
MSH6P52701 HMGB1P31-201ENST00000437242 427 ntBASIC2.57□□□□□ -2
MSH6P52701 ZNF736P1Y-201ENST00000440402 1276 ntBASIC2.57□□□□□ -2
MSH6P52701 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 UBBP3-201ENST00000445497 241 ntBASIC2.57□□□□□ -2
MSH6P52701 EXOSC3P1-201ENST00000448649 500 ntBASIC2.57□□□□□ -2
MSH6P52701 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.57□□□□□ -2
MSH6P52701 AC104164.3-201ENST00000467363 1258 ntBASIC2.57□□□□□ -2
MSH6P52701 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.57□□□□□ -2
MSH6P52701 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.57□□□□□ -2
MSH6P52701 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.57□□□□□ -2
MSH6P52701 RNY4P37-201ENST00000516225 96 ntBASIC2.57□□□□□ -2
MSH6P52701 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 IGLV3-17-201ENST00000519099 244 ntBASIC2.57□□□□□ -2
MSH6P52701 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 NBEAP1-201ENST00000554452 979 ntBASIC2.57□□□□□ -2
MSH6P52701 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.57□□□□□ -2
MSH6P52701 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 AC090615.1-201ENST00000577519 154 ntBASIC2.57□□□□□ -2
MSH6P52701 MIR4446-201ENST00000578505 67 ntBASIC2.57□□□□□ -2
MSH6P52701 AC091057.3-201ENST00000602684 733 ntBASIC2.57□□□□□ -2
MSH6P52701 RPP40P2-201ENST00000603596 712 ntBASIC2.57□□□□□ -2
MSH6P52701 AL138880.2-201ENST00000616214 239 ntBASIC2.57□□□□□ -2
MSH6P52701 AL109620.1-201ENST00000618738 1197 ntBASIC2.57□□□□□ -2
MSH6P52701 AC022306.3-201ENST00000619930 550 ntBASIC2.57□□□□□ -2
MSH6P52701 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.57□□□□□ -2
MSH6P52701 AC231657.1-201ENST00000624313 397 ntBASIC2.57□□□□□ -2
MSH6P52701 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.57□□□□□ -2
MSH6P52701 AL390862.1-201ENST00000635467 1469 ntBASIC2.56□□□□□ -2
MSH6P52701 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
MSH6P52701 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
MSH6P52701 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH6P52701 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH6P52701 RNU6-621P-201ENST00000364752 109 ntBASIC2.56□□□□□ -2
MSH6P52701 Y_RNA.548-201ENST00000384656 105 ntBASIC2.56□□□□□ -2
MSH6P52701 SNORA1.3-201ENST00000384676 136 ntBASIC2.56□□□□□ -2
MSH6P52701 RNU2-20P-201ENST00000410425 191 ntBASIC2.56□□□□□ -2
MSH6P52701 RNU4-22P-201ENST00000411058 166 ntBASIC2.56□□□□□ -2
MSH6P52701 RPS3AP37-201ENST00000419176 745 ntBASIC2.56□□□□□ -2
MSH6P52701 AL139421.1-201ENST00000423010 169 ntBASIC2.56□□□□□ -2
MSH6P52701 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.56□□□□□ -2
MSH6P52701 RPL26P6-201ENST00000440913 438 ntBASIC2.56□□□□□ -2
MSH6P52701 AL031659.1-201ENST00000447075 539 ntBASIC2.56□□□□□ -2
MSH6P52701 AL590664.1-201ENST00000448065 339 ntBASIC2.56□□□□□ -2
MSH6P52701 ZNF886P-201ENST00000450781 723 ntBASIC2.56□□□□□ -2
MSH6P52701 AL021397.1-201ENST00000451806 248 ntBASIC2.56□□□□□ -2
MSH6P52701 AL137159.1-201ENST00000452808 512 ntBASIC2.56□□□□□ -2
MSH6P52701 SNRPFP4-201ENST00000456366 242 ntBASIC2.56□□□□□ -2
MSH6P52701 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.56□□□□□ -2
MSH6P52701 AC109486.1-201ENST00000486833 374 ntBASIC2.56□□□□□ -2
MSH6P52701 AC009901.1-201ENST00000506703 541 ntBASIC2.56□□□□□ -2
MSH6P52701 AC109464.2-201ENST00000510242 943 ntBASIC2.56□□□□□ -2
MSH6P52701 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.56□□□□□ -2
MSH6P52701 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.56□□□□□ -2
MSH6P52701 OR10V3P-201ENST00000525712 725 ntBASIC2.56□□□□□ -2
MSH6P52701 DEFB131D-201ENST00000526803 184 ntBASIC2.56□□□□□ -2
MSH6P52701 AC087441.2-201ENST00000529141 262 ntBASIC2.56□□□□□ -2
MSH6P52701 AL354943.1-201ENST00000572103 781 ntBASIC2.56□□□□□ -2
MSH6P52701 MIR3921-201ENST00000577308 85 ntBASIC2.56□□□□□ -2
MSH6P52701 AC105224.1-201ENST00000587055 421 ntBASIC2.56□□□□□ -2
MSH6P52701 AL445264.1-201ENST00000621719 171 ntBASIC2.56□□□□□ -2
MSH6P52701 AL022578.1-201ENST00000439330 1433 ntBASIC2.56□□□□□ -2
MSH6P52701 AC138915.1-201ENST00000565427 1685 ntBASIC2.56□□□□□ -2
MSH6P52701 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
MSH6P52701 RNU6-343P-201ENST00000364709 104 ntBASIC2.55□□□□□ -2
MSH6P52701 RPS4XP3-201ENST00000398541 413 ntBASIC2.55□□□□□ -2
MSH6P52701 FO393413.1-201ENST00000402892 195 ntBASIC2.55□□□□□ -2
MSH6P52701 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.55□□□□□ -2
MSH6P52701 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.55□□□□□ -2
MSH6P52701 AL031313.1-201ENST00000448435 256 ntBASIC2.55□□□□□ -2
MSH6P52701 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms