Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 AC091390.3-201ENST00000426478 338 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC093151.1-201ENST00000427711 313 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 USP9YP7-201ENST00000436723 430 ntBASIC4.72□□□□□ -1.65
LIG3P49916 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.72□□□□□ -1.65
LIG3P49916 FTH1P25-201ENST00000447665 469 ntBASIC4.72□□□□□ -1.65
LIG3P49916 USP9YP32-201ENST00000452432 430 ntBASIC4.72□□□□□ -1.65
LIG3P49916 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.72□□□□□ -1.65
LIG3P49916 IFITM8P-201ENST00000522529 394 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.72□□□□□ -1.65
LIG3P49916 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.72□□□□□ -1.65
LIG3P49916 ATP5F1P5-201ENST00000526403 760 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AP002404.1-201ENST00000532005 451 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.72□□□□□ -1.65
LIG3P49916 FKBP1BP1-201ENST00000553366 325 ntBASIC4.72□□□□□ -1.65
LIG3P49916 TRAV37-201ENST00000553906 342 ntBASIC4.72□□□□□ -1.65
LIG3P49916 MED28P6-201ENST00000558776 231 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.72□□□□□ -1.65
LIG3P49916 RN7SL690P-201ENST00000582087 240 ntBASIC4.72□□□□□ -1.65
LIG3P49916 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.72□□□□□ -1.65
LIG3P49916 AC234771.5-201ENST00000600161 514 ntBASIC4.72□□□□□ -1.65
LIG3P49916 RPL7P50-201ENST00000600588 727 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC068790.4-201ENST00000602474 263 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.72□□□□□ -1.65
LIG3P49916 AL591516.1-201ENST00000611326 274 ntBASIC4.72□□□□□ -1.65
LIG3P49916 U4.1-201ENST00000620349 87 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AP000346.3-201ENST00000622821 210 ntBASIC4.72□□□□□ -1.65
LIG3P49916 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
LIG3P49916 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIG3P49916 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
LIG3P49916 Y_RNA.47-201ENST00000362697 108 ntBASIC4.71□□□□□ -1.66
LIG3P49916 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIG3P49916 AL590762.2-201ENST00000395798 571 ntBASIC4.71□□□□□ -1.66
LIG3P49916 RN7SKP267-201ENST00000410381 285 ntBASIC4.71□□□□□ -1.66
LIG3P49916 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIG3P49916 AC140479.3-201ENST00000418944 1126 ntBASIC4.71□□□□□ -1.66
LIG3P49916 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.71□□□□□ -1.66
LIG3P49916 AC245028.1-201ENST00000423259 256 ntBASIC4.71□□□□□ -1.66
LIG3P49916 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.71□□□□□ -1.66
LIG3P49916 AL356867.1-201ENST00000429623 299 ntBASIC4.71□□□□□ -1.66
LIG3P49916 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.71□□□□□ -1.66
LIG3P49916 RPS24P13-201ENST00000442520 397 ntBASIC4.71□□□□□ -1.66
LIG3P49916 snoU13.24-201ENST00000458998 104 ntBASIC4.71□□□□□ -1.66
LIG3P49916 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.71□□□□□ -1.66
LIG3P49916 HMGB1P22-201ENST00000505315 124 ntBASIC4.71□□□□□ -1.66
LIG3P49916 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.71□□□□□ -1.66
LIG3P49916 RNU6-475P-201ENST00000516073 104 ntBASIC4.71□□□□□ -1.66
LIG3P49916 RNU1-86P-201ENST00000516108 154 ntBASIC4.71□□□□□ -1.66
LIG3P49916 RNU1-107P-201ENST00000516617 154 ntBASIC4.71□□□□□ -1.66
LIG3P49916 Y_RNA.721-201ENST00000517207 102 ntBASIC4.71□□□□□ -1.66
LIG3P49916 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.71□□□□□ -1.66
LIG3P49916 AC084851.1-201ENST00000529105 249 ntBASIC4.71□□□□□ -1.66
LIG3P49916 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.71□□□□□ -1.66
LIG3P49916 AC093227.2-201ENST00000589357 285 ntBASIC4.71□□□□□ -1.66
LIG3P49916 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.71□□□□□ -1.66
LIG3P49916 AC119674.1-207ENST00000641355 633 ntBASIC4.71□□□□□ -1.66
LIG3P49916 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIG3P49916 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.71□□□□□ -1.66
LIG3P49916 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.7□□□□□ -1.66
LIG3P49916 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIG3P49916 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIG3P49916 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIG3P49916 ZFRP1-201ENST00000457579 2970 ntBASIC4.7□□□□□ -1.66
LIG3P49916 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIG3P49916 Y_RNA.39-201ENST00000362620 98 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RNU6-596P-201ENST00000365395 98 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RNU6-933P-201ENST00000384424 107 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RNU6-1025P-201ENST00000410629 104 ntBASIC4.7□□□□□ -1.66
LIG3P49916 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG3P49916 AL158156.1-201ENST00000422509 473 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG3P49916 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.7□□□□□ -1.66
LIG3P49916 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AL731563.1-201ENST00000442202 214 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RPS24P6-201ENST00000452670 400 ntBASIC4.7□□□□□ -1.66
LIG3P49916 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG3P49916 RPL9P32-201ENST00000464118 620 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RPS23P3-201ENST00000470993 430 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RPL7P5-201ENST00000471472 736 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AC011005.2-201ENST00000487324 359 ntBASIC4.7□□□□□ -1.66
LIG3P49916 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG3P49916 RNA5SP446-201ENST00000515955 82 ntBASIC4.7□□□□□ -1.66
LIG3P49916 RNU6-1256P-201ENST00000516539 103 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.7□□□□□ -1.66
LIG3P49916 HIGD1AP5-201ENST00000529959 259 ntBASIC4.7□□□□□ -1.66
LIG3P49916 SUB1P3-201ENST00000564581 315 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AC113195.1-201ENST00000579952 141 ntBASIC4.7□□□□□ -1.66
LIG3P49916 PRR13P7-201ENST00000605538 430 ntBASIC4.7□□□□□ -1.66
LIG3P49916 AP002826.1-201ENST00000608835 315 ntBASIC4.7□□□□□ -1.66
LIG3P49916 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.7□□□□□ -1.66
LIG3P49916 BMS1P21-201ENST00000634565 365 ntBASIC4.7□□□□□ -1.66
LIG3P49916 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms