Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNA5SP385-201ENST00000515947 110 ntBASIC2.84□□□□□ -1.95
SOX3P41225 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
SOX3P41225 AC009812.2-201ENST00000517657 457 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AP001804.3-201ENST00000525146 880 ntBASIC2.84□□□□□ -1.95
SOX3P41225 PSMA2P1-201ENST00000526365 646 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AP003072.2-201ENST00000527756 676 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AP002404.1-201ENST00000532005 451 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.84□□□□□ -1.95
SOX3P41225 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.84□□□□□ -1.95
SOX3P41225 AL391840.1-201ENST00000571144 367 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.84□□□□□ -1.95
SOX3P41225 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.84□□□□□ -1.95
SOX3P41225 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.84□□□□□ -1.95
SOX3P41225 AC068790.2-201ENST00000602601 557 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MIR98-201ENST00000606724 119 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC084782.3-201ENST00000612282 578 ntBASIC2.84□□□□□ -1.95
SOX3P41225 ATP5A1P2-202ENST00000616464 443 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
SOX3P41225 AC136475.10-201ENST00000620253 385 ntBASIC2.84□□□□□ -1.95
SOX3P41225 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.84□□□□□ -1.95
SOX3P41225 FRG1KP-201ENST00000623592 341 ntBASIC2.84□□□□□ -1.95
SOX3P41225 CR848007.1-201ENST00000442354 1699 ntBASIC2.84□□□□□ -1.95
SOX3P41225 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.84□□□□□ -1.96
SOX3P41225 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
SOX3P41225 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
SOX3P41225 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.84□□□□□ -1.96
SOX3P41225 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SOX3P41225 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.83□□□□□ -1.96
SOX3P41225 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SOX3P41225 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SOX3P41225 RNU6-960P-201ENST00000364056 120 ntBASIC2.83□□□□□ -1.96
SOX3P41225 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.83□□□□□ -1.96
SOX3P41225 RNU6-259P-201ENST00000383999 107 ntBASIC2.83□□□□□ -1.96
SOX3P41225 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AL591034.1-201ENST00000407447 340 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AL513331.1-201ENST00000411908 397 ntBASIC2.83□□□□□ -1.96
SOX3P41225 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.83□□□□□ -1.96
SOX3P41225 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 RPS23P3-201ENST00000470993 430 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC011825.1-201ENST00000484967 388 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 RPL37P25-201ENST00000507308 276 ntBASIC2.83□□□□□ -1.96
SOX3P41225 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.83□□□□□ -1.96
SOX3P41225 AC091133.4-201ENST00000511142 308 ntBASIC2.83□□□□□ -1.96
SOX3P41225 RN7SKP272-201ENST00000516988 232 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC090572.1-201ENST00000519251 160 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.83□□□□□ -1.96
SOX3P41225 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SOX3P41225 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 RPS3AP4-201ENST00000555161 764 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC010546.1-201ENST00000569391 485 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC005951.1-201ENST00000576706 485 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX3P41225 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.83□□□□□ -1.96
SOX3P41225 MIR4506-201ENST00000584693 77 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC015540.1-201ENST00000615828 501 ntBASIC2.83□□□□□ -1.96
SOX3P41225 AC068880.5-201ENST00000624331 290 ntBASIC2.83□□□□□ -1.96
SOX3P41225 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SOX3P41225 ZNF807-201ENST00000328088 1707 ntBASIC2.82□□□□□ -1.96
SOX3P41225 MIR22-201ENST00000362190 85 ntBASIC2.82□□□□□ -1.96
SOX3P41225 RNU6-181P-201ENST00000363225 107 ntBASIC2.82□□□□□ -1.96
SOX3P41225 SNORA71.1-201ENST00000364523 117 ntBASIC2.82□□□□□ -1.96
SOX3P41225 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SOX3P41225 RN7SKP220-201ENST00000410611 288 ntBASIC2.82□□□□□ -1.96
SOX3P41225 ZNF90P2-204ENST00000419323 1075 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.82□□□□□ -1.96
SOX3P41225 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX3P41225 AC091390.3-201ENST00000426478 338 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.82□□□□□ -1.96
SOX3P41225 AC133104.1-201ENST00000429100 218 ntBASIC2.82□□□□□ -1.96
SOX3P41225 FCF1P1-201ENST00000432690 571 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX3P41225 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.82□□□□□ -1.96
SOX3P41225 AC132479.1-201ENST00000449160 144 ntBASIC2.82□□□□□ -1.96
SOX3P41225 SNRPGP6-201ENST00000451124 220 ntBASIC2.82□□□□□ -1.96
SOX3P41225 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX3P41225 MTCYBP1-201ENST00000454315 1119 ntBASIC2.82□□□□□ -1.96
SOX3P41225 S100A11P2-201ENST00000467589 312 ntBASIC2.82□□□□□ -1.96
SOX3P41225 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX3P41225 AP004217.1-201ENST00000480579 346 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.82□□□□□ -1.96
SOX3P41225 RN7SKP43-201ENST00000516173 320 ntBASIC2.82□□□□□ -1.96
SOX3P41225 RNU7-51P-201ENST00000516560 62 ntBASIC2.82□□□□□ -1.96
SOX3P41225 RNU6-445P-201ENST00000516949 107 ntBASIC2.82□□□□□ -1.96
SOX3P41225 RNU6-1220P-201ENST00000517126 108 ntBASIC2.82□□□□□ -1.96
SOX3P41225 RN7SKP258-201ENST00000517151 304 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC022880.1-201ENST00000534017 973 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC022080.3-201ENST00000544433 482 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.82□□□□□ -1.96
SOX3P41225 AC124947.2-202ENST00000552735 133 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.82□□□□□ -1.96
SOX3P41225 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.82□□□□□ -1.96
SOX3P41225 GLUD1P4-201ENST00000590914 418 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.6-201ENST00000603753 252 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.11-201ENST00000604059 253 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms