Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.92□□□□□ -2.1
COL18A1P39060 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.92□□□□□ -2.1
COL18A1P39060 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.92□□□□□ -2.1
COL18A1P39060 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.92□□□□□ -2.1
COL18A1P39060 AC008628.1-201ENST00000508663 265 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 RNU6-334P-201ENST00000517072 102 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.92□□□□□ -2.1
COL18A1P39060 ZNF971P-201ENST00000562068 1249 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.92□□□□□ -2.1
COL18A1P39060 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.92□□□□□ -2.1
COL18A1P39060 MIR6515-201ENST00000619843 57 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.92□□□□□ -2.1
COL18A1P39060 AL157770.1-201ENST00000623049 439 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 U6.101-201ENST00000637707 76 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL18A1P39060 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL18A1P39060 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
COL18A1P39060 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.91□□□□□ -2.1
COL18A1P39060 RNU6-882P-201ENST00000391025 103 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AC092634.6-201ENST00000418558 192 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AC092634.2-201ENST00000428146 1010 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC1.91□□□□□ -2.1
COL18A1P39060 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.91□□□□□ -2.1
COL18A1P39060 AC024082.2-201ENST00000434771 238 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 GTF2IP7-202ENST00000436677 309 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AL592447.1-201ENST00000447592 540 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 SNRPGP6-201ENST00000451124 220 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 ATP5J2P3-201ENST00000451550 258 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.91□□□□□ -2.1
COL18A1P39060 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.91□□□□□ -2.1
COL18A1P39060 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.91□□□□□ -2.1
COL18A1P39060 SETP2-201ENST00000553886 926 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 MIR3609-201ENST00000582661 80 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AC080013.4-201ENST00000607624 649 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 MIR6734-201ENST00000621166 68 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AC004009.2-201ENST00000623016 728 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 AC087821.2-201ENST00000637086 450 ntBASIC1.91□□□□□ -2.1
COL18A1P39060 RNU5B-1-201ENST00000363286 116 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 RNY1-201ENST00000364228 113 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 MIR506-201ENST00000384998 124 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AL513185.2-201ENST00000425543 193 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 RAC1P8-201ENST00000427086 527 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 MTCYBP11-201ENST00000447254 1109 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AL353691.1-201ENST00000451332 387 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.9□□□□□ -2.1
COL18A1P39060 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.9□□□□□ -2.1
COL18A1P39060 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.9□□□□□ -2.1
COL18A1P39060 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.9□□□□□ -2.1
COL18A1P39060 AC023632.1-201ENST00000518463 375 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.9□□□□□ -2.1
COL18A1P39060 AC109454.4-201ENST00000623411 649 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AC068880.5-201ENST00000624331 290 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 AC008669.1-201ENST00000565823 2178 ntBASIC1.9□□□□□ -2.1
COL18A1P39060 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
COL18A1P39060 RNU6-236P-201ENST00000363886 106 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 SUMO1P4-201ENST00000429430 302 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AL356867.1-201ENST00000429623 299 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 COX6CP18-201ENST00000448769 222 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC010099.1-201ENST00000455434 375 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 RNU6-420P-201ENST00000458780 107 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC090515.1-201ENST00000465295 476 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.9□□□□□ -2.11
COL18A1P39060 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC1.9□□□□□ -2.11
COL18A1P39060 MTCYBP18-201ENST00000501056 747 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.9□□□□□ -2.11
COL18A1P39060 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.9□□□□□ -2.11
COL18A1P39060 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.9□□□□□ -2.11
COL18A1P39060 DUXAP11-201ENST00000603858 526 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC080078.3-201ENST00000605407 463 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC005332.6-201ENST00000613178 446 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 AC005296.1-201ENST00000616145 209 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 uc_338.12-201ENST00000616344 181 ntBASIC1.9□□□□□ -2.11
COL18A1P39060 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
COL18A1P39060 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
COL18A1P39060 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
COL18A1P39060 RNU6-468P-201ENST00000384003 109 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
COL18A1P39060 RNA5SP354-201ENST00000391247 136 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AC096533.1-201ENST00000411645 353 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 BX682237.1-201ENST00000415016 335 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 MTCO2P1-201ENST00000424648 477 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.89□□□□□ -2.11
COL18A1P39060 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL18A1P39060 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.89□□□□□ -2.11
COL18A1P39060 UBBP3-201ENST00000445497 241 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AL096829.2-201ENST00000446582 742 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.89□□□□□ -2.11
COL18A1P39060 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL18A1P39060 AC022483.1-201ENST00000514020 567 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 RNU6-1282P-201ENST00000516735 96 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 RNU6-1261P-201ENST00000517194 104 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 HSPA8P13-201ENST00000523715 472 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 CASP1P1-201ENST00000526345 212 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AP001189.2-201ENST00000527320 189 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 ACTR3BP3-201ENST00000565577 979 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AC008739.2-201ENST00000597006 317 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 U73023.1-201ENST00000603134 700 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AL583856.2-201ENST00000606298 543 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 AC008759.3-201ENST00000613300 508 ntBASIC1.89□□□□□ -2.11
COL18A1P39060 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms