Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC109925.1-201ENST00000478069 331 ntBASIC3.66□□□□□ -1.82
CIITAP33076 RPL36AP51-201ENST00000487216 318 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC079382.1-201ENST00000493346 557 ntBASIC3.66□□□□□ -1.82
CIITAP33076 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.66□□□□□ -1.82
CIITAP33076 AC114797.1-201ENST00000514003 728 ntBASIC3.66□□□□□ -1.82
CIITAP33076 RNU6-358P-201ENST00000516564 75 ntBASIC3.66□□□□□ -1.82
CIITAP33076 RNU6-835P-201ENST00000516974 104 ntBASIC3.66□□□□□ -1.82
CIITAP33076 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.66□□□□□ -1.82
CIITAP33076 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.66□□□□□ -1.82
CIITAP33076 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.66□□□□□ -1.82
CIITAP33076 AL121579.1-201ENST00000555129 305 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.66□□□□□ -1.82
CIITAP33076 MIR5195-201ENST00000583555 115 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC105224.1-201ENST00000587055 421 ntBASIC3.66□□□□□ -1.82
CIITAP33076 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.66□□□□□ -1.82
CIITAP33076 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.66□□□□□ -1.82
CIITAP33076 AC004908.2-201ENST00000609090 574 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC092794.2-201ENST00000620933 563 ntBASIC3.66□□□□□ -1.82
CIITAP33076 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.66□□□□□ -1.82
CIITAP33076 AL353748.2-201ENST00000622148 471 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC005609.4-201ENST00000625071 447 ntBASIC3.66□□□□□ -1.82
CIITAP33076 AC090740.1-201ENST00000623193 2262 ntBASIC3.66□□□□□ -1.82
CIITAP33076 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.66□□□□□ -1.82
CIITAP33076 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CIITAP33076 AF117829.1-206ENST00000621883 3802 ntBASIC3.66□□□□□ -1.82
CIITAP33076 TAB3P1-202ENST00000452645 1634 ntBASIC3.66□□□□□ -1.82
CIITAP33076 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
CIITAP33076 AC091152.2-201ENST00000591628 2569 ntBASIC3.65□□□□□ -1.82
CIITAP33076 AC007496.3-201ENST00000624987 3443 ntBASIC3.65□□□□□ -1.82
CIITAP33076 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CIITAP33076 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 RNU5E-8P-201ENST00000363502 116 ntBASIC3.65□□□□□ -1.83
CIITAP33076 RNA5SP387-201ENST00000364226 106 ntBASIC3.65□□□□□ -1.83
CIITAP33076 RNU6-1322P-201ENST00000364309 107 ntBASIC3.65□□□□□ -1.83
CIITAP33076 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CIITAP33076 EI24P2-201ENST00000397776 1076 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AL136372.1-201ENST00000403060 228 ntBASIC3.65□□□□□ -1.83
CIITAP33076 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CIITAP33076 AC138393.2-201ENST00000414742 246 ntBASIC3.65□□□□□ -1.83
CIITAP33076 MTCO1P39-201ENST00000426148 480 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AL606489.2-201ENST00000433886 234 ntBASIC3.65□□□□□ -1.83
CIITAP33076 BX679664.1-201ENST00000434429 253 ntBASIC3.65□□□□□ -1.83
CIITAP33076 HMGN2P20-201ENST00000437531 273 ntBASIC3.65□□□□□ -1.83
CIITAP33076 CST9LP2-201ENST00000437612 320 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 AC005094.1-201ENST00000440420 368 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.65□□□□□ -1.83
CIITAP33076 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.65□□□□□ -1.83
CIITAP33076 AC083798.1-201ENST00000472671 131 ntBASIC3.65□□□□□ -1.83
CIITAP33076 RPL7P23-201ENST00000493874 747 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.65□□□□□ -1.83
CIITAP33076 RNU6-1281P-201ENST00000516223 105 ntBASIC3.65□□□□□ -1.83
CIITAP33076 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.65□□□□□ -1.83
CIITAP33076 RNU6-64P-201ENST00000517119 105 ntBASIC3.65□□□□□ -1.83
CIITAP33076 NDUFB9P3-201ENST00000521269 501 ntBASIC3.65□□□□□ -1.83
CIITAP33076 DEFB108D-201ENST00000527787 222 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.65□□□□□ -1.83
CIITAP33076 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 ARL2BPP2-201ENST00000550907 489 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.65□□□□□ -1.83
CIITAP33076 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.65□□□□□ -1.83
CIITAP33076 AC008752.3-201ENST00000588113 712 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AP001330.4-201ENST00000604350 154 ntBASIC3.65□□□□□ -1.83
CIITAP33076 Z84480.1-201ENST00000605131 311 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC012443.1-201ENST00000605605 231 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.65□□□□□ -1.83
CIITAP33076 AL020991.1-201ENST00000612314 373 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AL390240.1-201ENST00000612950 384 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AL008636.1-201ENST00000625038 1018 ntBASIC3.65□□□□□ -1.83
CIITAP33076 ZNF680P1-201ENST00000436625 1469 ntBASIC3.65□□□□□ -1.83
CIITAP33076 AC093010.3-201ENST00000570269 15214 ntBASIC3.64□□□□□ -1.83
CIITAP33076 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CIITAP33076 AL355596.1-201ENST00000565399 3996 ntBASIC3.64□□□□□ -1.83
CIITAP33076 SNORD56.2-201ENST00000363242 71 ntBASIC3.64□□□□□ -1.83
CIITAP33076 U3.11-201ENST00000364476 212 ntBASIC3.64□□□□□ -1.83
CIITAP33076 SNORA9-201ENST00000384215 133 ntBASIC3.64□□□□□ -1.83
CIITAP33076 Y_RNA.481-201ENST00000384373 102 ntBASIC3.64□□□□□ -1.83
CIITAP33076 RNU6-882P-201ENST00000391025 103 ntBASIC3.64□□□□□ -1.83
CIITAP33076 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CIITAP33076 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.64□□□□□ -1.83
CIITAP33076 RNU2-9P-201ENST00000410194 145 ntBASIC3.64□□□□□ -1.83
CIITAP33076 RNU6-516P-201ENST00000411381 104 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.64□□□□□ -1.83
CIITAP33076 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.64□□□□□ -1.83
CIITAP33076 AC137499.1-201ENST00000427602 88 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.64□□□□□ -1.83
CIITAP33076 GTF2IP20-201ENST00000431663 360 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AC006028.1-201ENST00000438379 402 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.64□□□□□ -1.83
CIITAP33076 AC016696.1-201ENST00000446949 318 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.64□□□□□ -1.83
CIITAP33076 AC108059.3-201ENST00000456388 214 ntBASIC3.64□□□□□ -1.83
CIITAP33076 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.64□□□□□ -1.83
CIITAP33076 AL049714.1-201ENST00000466686 347 ntBASIC3.64□□□□□ -1.83
CIITAP33076 RPS23P3-201ENST00000470993 430 ntBASIC3.64□□□□□ -1.83
CIITAP33076 RN7SL504P-201ENST00000494496 287 ntBASIC3.64□□□□□ -1.83
CIITAP33076 VN1R104P-201ENST00000505115 1009 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms