Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.07□□□□□ -1.76
SMARCA1P28370 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AL162395.1-201ENST00000457882 422 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.07□□□□□ -1.76
SMARCA1P28370 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.07□□□□□ -1.76
SMARCA1P28370 RN7SL432P-201ENST00000484057 298 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 RPL39P36-201ENST00000490784 156 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AC025465.4-201ENST00000513422 638 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.07□□□□□ -1.76
SMARCA1P28370 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.07□□□□□ -1.76
SMARCA1P28370 MIR3922-201ENST00000585192 84 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AC010525.2-201ENST00000590920 195 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.07□□□□□ -1.76
SMARCA1P28370 BNIP3P10-201ENST00000605360 577 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 U3.45-201ENST00000607547 219 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AC010133.1-201ENST00000615809 842 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 XIST_intron.1-201ENST00000619444 68 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.07□□□□□ -1.76
SMARCA1P28370 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SMARCA1P28370 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SMARCA1P28370 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AL354685.2-201ENST00000448218 1447 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 ASNSP3-201ENST00000451989 1306 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC005183.1-201ENST00000603687 1979 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 AL139276.1-201ENST00000311910 1001 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 NACAP2-201ENST00000318548 624 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 SNORA71.3-201ENST00000362582 128 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 RNU6-946P-201ENST00000383878 107 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 NDUFS5P1-201ENST00000405668 289 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC073063.1-201ENST00000434352 607 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
SMARCA1P28370 MTND1P18-201ENST00000448191 573 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC091951.2-201ENST00000500762 203 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC108078.2-201ENST00000510750 236 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 SNORD60.2-201ENST00000516883 86 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 ERHP1-201ENST00000523006 310 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.06□□□□□ -1.76
SMARCA1P28370 CENPUP1-201ENST00000526649 1202 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC015917.1-201ENST00000579654 510 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.6-201ENST00000603753 252 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.11-201ENST00000604059 253 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC008162.1-201ENST00000604718 254 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.1-201ENST00000604752 252 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.5-201ENST00000605253 252 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.12-201ENST00000605291 253 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.8-201ENST00000605353 252 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 LARP7P1-201ENST00000605576 316 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL670379.7-201ENST00000605823 252 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AC009994.1-201ENST00000606889 253 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 SDR42E1P2-201ENST00000614861 481 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AP001486.3-201ENST00000615334 372 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 MIR4275-201ENST00000636486 87 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SMARCA1P28370 AC092326.2-201ENST00000624772 1561 ntBASIC4.06□□□□□ -1.76
SMARCA1P28370 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.06□□□□□ -1.76
SMARCA1P28370 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SMARCA1P28370 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.05□□□□□ -1.76
SMARCA1P28370 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
SMARCA1P28370 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SMARCA1P28370 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.05□□□□□ -1.76
SMARCA1P28370 DEFB108F-201ENST00000344638 222 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 FRG1CP-201ENST00000358464 769 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 Y_RNA.576-201ENST00000384781 102 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 MIR7-3-201ENST00000384898 110 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SMARCA1P28370 AL451062.2-201ENST00000427515 271 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.05□□□□□ -1.76
SMARCA1P28370 USP9YP8-201ENST00000441913 500 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms