Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A1P12109 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
COL6A1P12109 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
COL6A1P12109 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A1P12109 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A1P12109 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.45□□□□□ -1.7
COL6A1P12109 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A1P12109 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A1P12109 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A1P12109 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A1P12109 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.45□□□□□ -1.7
COL6A1P12109 RNU6-82P-201ENST00000363970 107 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 Y_RNA.378-201ENST00000365652 113 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 DEFB109C-201ENST00000382575 264 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 DEFB109B-201ENST00000382656 264 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL6A1P12109 MIR1183-201ENST00000408856 89 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 RN7SKP158-201ENST00000410453 326 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 RNU4-14P-201ENST00000410858 122 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 HSPD1P21-201ENST00000436541 245 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 HMGB3P11-201ENST00000440127 604 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL121871.1-201ENST00000443413 436 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A1P12109 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A1P12109 SNORD97-201ENST00000459187 142 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL133162.1-201ENST00000463228 453 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AC004801.2-202ENST00000463559 283 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 RNU6-988P-201ENST00000519081 107 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 HMGN1P28-201ENST00000521340 364 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.45□□□□□ -1.7
COL6A1P12109 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A1P12109 AL137161.1-201ENST00000532231 390 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL133271.1-201ENST00000538229 291 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AC063950.1-201ENST00000552036 308 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 SNRPGP18-201ENST00000553000 214 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A1P12109 AL118558.2-201ENST00000556294 238 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 MIR4790-201ENST00000577799 79 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.45□□□□□ -1.7
COL6A1P12109 AL451044.1-201ENST00000604867 238 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 RMST_9.1-201ENST00000619945 193 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 7SK.10-201ENST00000621414 298 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AC025034.2-201ENST00000623264 286 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.45□□□□□ -1.7
COL6A1P12109 AC055839.1-201ENST00000634467 498 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A1P12109 BDP1P-201ENST00000582658 1990 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 AL049781.1-201ENST00000623195 3585 ntBASIC4.45□□□□□ -1.7
COL6A1P12109 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 AC087190.4-201ENST00000574616 8334 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 RNU6-1287P-201ENST00000362914 107 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 SNORA22B-201ENST00000383876 138 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 U1.1-201ENST00000384101 164 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RNU6-432P-201ENST00000384196 109 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 SNORD51-201ENST00000384320 80 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RNU6-1060P-201ENST00000384664 107 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RNU2-36P-201ENST00000410361 191 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RNU4-46P-201ENST00000410818 138 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC099677.1-201ENST00000420575 175 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 RPS17P13-201ENST00000448974 407 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 MTND5P22-201ENST00000458380 195 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 RNU6-566P-201ENST00000516790 107 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RNA5SP179-201ENST00000517284 121 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 APOOP3-201ENST00000536787 586 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 SYF2P1-201ENST00000550658 413 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.44□□□□□ -1.7
COL6A1P12109 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A1P12109 MIR5690-201ENST00000583739 73 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 AC133104.2-201ENST00000615272 193 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 MIR7702-201ENST00000621931 59 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 AC244517.12-201ENST00000623581 663 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 AL136313.1-201ENST00000624804 202 ntBASIC4.44□□□□□ -1.7
COL6A1P12109 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A1P12109 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A1P12109 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A1P12109 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A1P12109 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.43□□□□□ -1.7
COL6A1P12109 PRO1804-201ENST00000623780 2050 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms