Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FTH1P25-201ENST00000447665 469 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 SRRM1P2-201ENST00000464531 1192 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 RPL23AP41-201ENST00000484754 458 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 AC105252.1-201ENST00000503089 286 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXD4P09016 AC091133.4-201ENST00000511142 308 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 RN7SKP272-201ENST00000516988 232 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 MTCO2P4-201ENST00000517968 247 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 MTCO3P13-201ENST00000577757 781 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 MIR3682-201ENST00000581338 84 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 MIR4672-201ENST00000583126 81 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 UBL5P2-201ENST00000583788 219 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 AP001429.1-201ENST00000602568 530 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC068790.3-201ENST00000602988 553 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 DUXAP4-201ENST00000603046 613 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC121334.2-201ENST00000605387 271 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 AL359198.2-201ENST00000611836 194 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC107871.2-201ENST00000612894 502 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 ATP5A1P2-202ENST00000616464 443 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC099654.12-201ENST00000639868 649 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HOXD4P09016 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
HOXD4P09016 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD4P09016 AC027514.1-201ENST00000588561 1603 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD4P09016 RNU5E-1-201ENST00000362477 120 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RNY4P16-201ENST00000364768 94 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RNU6-517P-201ENST00000384362 110 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 MIR135A2-201ENST00000384854 100 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 MIR19A-201ENST00000384878 82 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RNU6-648P-201ENST00000410190 107 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD4P09016 ELOCP17-201ENST00000414751 326 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.78□□□□□ -1.96
HOXD4P09016 AC019097.1-201ENST00000424783 735 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AL358934.1-201ENST00000432346 324 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 AC104850.1-201ENST00000435940 476 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 RPL23AP20-201ENST00000447965 421 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXD4P09016 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD4P09016 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 RN7SL429P-201ENST00000479090 223 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RPL9P33-201ENST00000484311 566 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 RN7SL489P-201ENST00000486185 223 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RN7SL327P-201ENST00000488659 223 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AC026801.2-201ENST00000515352 425 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD4P09016 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 AL133271.1-201ENST00000538229 291 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 MED28P6-201ENST00000558776 231 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 COX6CP3-201ENST00000580869 223 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AC012443.1-201ENST00000605605 231 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AL158211.4-201ENST00000606988 584 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AL591516.1-201ENST00000611326 274 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AC068831.7-201ENST00000616954 363 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 RN7SL853P-201ENST00000617250 223 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 AC068880.5-201ENST00000624331 290 ntBASIC2.78□□□□□ -1.96
HOXD4P09016 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
HOXD4P09016 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD4P09016 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD4P09016 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXD4P09016 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD4P09016 AC092435.3-201ENST00000565538 3654 ntBASIC2.78□□□□□ -1.97
HOXD4P09016 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
HOXD4P09016 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.78□□□□□ -1.97
HOXD4P09016 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD4P09016 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD4P09016 OR5J1P-201ENST00000313544 939 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
HOXD4P09016 MIR22-201ENST00000362190 85 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 MIR181B1-201ENST00000385240 110 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 RPL23AP32-201ENST00000395315 459 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 MRPL42P2-201ENST00000403169 426 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 RPL32P35-201ENST00000415214 394 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 SSXP9-201ENST00000417503 292 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 UBE2D3P2-201ENST00000424409 445 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD4P09016 RPL21P40-201ENST00000428586 483 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC022018.1-201ENST00000430685 241 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 RPL31P35-201ENST00000431058 377 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 MTND1P4-201ENST00000435196 415 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms