Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-1158P-201ENST00000391167 107 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL3A1P02461 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.91□□□□□ -1.78
COL3A1P02461 AC245054.2-201ENST00000415639 319 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AL645937.1-202ENST00000421799 937 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC008065.1-201ENST00000428525 348 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 UQCRHP3-201ENST00000451503 251 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 RN7SL75P-201ENST00000461926 281 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC027575.1-201ENST00000481064 460 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC021146.2-201ENST00000504736 556 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC093677.1-201ENST00000514414 678 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC112206.3-201ENST00000514578 389 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC105417.1-201ENST00000514691 285 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 HIGD1AP3-201ENST00000515857 278 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 Y_RNA.691-201ENST00000516611 103 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 BTF3P12-201ENST00000519620 469 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 COX6B1P6-201ENST00000522347 255 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.91□□□□□ -1.78
COL3A1P02461 AC022080.3-201ENST00000544433 482 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.91□□□□□ -1.78
COL3A1P02461 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.91□□□□□ -1.78
COL3A1P02461 HMGB1P6-201ENST00000569046 646 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 AC010525.2-201ENST00000590920 195 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.91□□□□□ -1.78
COL3A1P02461 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL3A1P02461 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.9□□□□□ -1.78
COL3A1P02461 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL3A1P02461 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL3A1P02461 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL3A1P02461 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.9□□□□□ -1.78
COL3A1P02461 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.9□□□□□ -1.78
COL3A1P02461 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL3A1P02461 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL3A1P02461 AC093831.2-201ENST00000624393 3427 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNF6P1-201ENST00000444889 1784 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL3A1P02461 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL3A1P02461 Y_RNA.146-201ENST00000363549 102 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNU6-196P-201ENST00000384315 107 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNU6-1151P-201ENST00000384684 107 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNU2-39P-201ENST00000410604 198 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.9□□□□□ -1.79
COL3A1P02461 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC105272.1-201ENST00000438604 198 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC239798.3-201ENST00000454459 408 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 Y_RNA.639-201ENST00000458981 102 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNU6-329P-201ENST00000459618 107 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 MRPS17P3-201ENST00000465453 385 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.9□□□□□ -1.79
COL3A1P02461 SNORA40.12-201ENST00000516329 111 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RNU6-794P-201ENST00000517261 64 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC008126.1-201ENST00000549019 480 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.9□□□□□ -1.79
COL3A1P02461 MIR3167-201ENST00000579623 85 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 RPL12P50-201ENST00000603116 116 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 AC016925.2-201ENST00000605108 242 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 PLCE1P1-201ENST00000622094 305 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL3A1P02461 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.9□□□□□ -1.79
COL3A1P02461 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
COL3A1P02461 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.9□□□□□ -1.79
COL3A1P02461 AC245100.2-201ENST00000454544 1679 ntBASIC3.9□□□□□ -1.79
COL3A1P02461 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL3A1P02461 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.89□□□□□ -1.79
COL3A1P02461 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL3A1P02461 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL3A1P02461 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL3A1P02461 NUP58P1-201ENST00000502546 1738 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 AL512646.1-201ENST00000269395 1077 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 Y_RNA.133-201ENST00000363428 110 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 RNY1P12-201ENST00000364251 105 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.89□□□□□ -1.79
COL3A1P02461 RNU6-639P-201ENST00000384074 107 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL3A1P02461 AC068050.1-201ENST00000394891 380 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 MTCYBP8-201ENST00000422855 651 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.89□□□□□ -1.79
COL3A1P02461 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.89□□□□□ -1.79
COL3A1P02461 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.89□□□□□ -1.79
COL3A1P02461 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.89□□□□□ -1.79
COL3A1P02461 RPS26P24-201ENST00000497656 331 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.89□□□□□ -1.79
COL3A1P02461 RPL38P4-201ENST00000502376 214 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL3A1P02461 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL3A1P02461 RN7SKP132-201ENST00000516001 208 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 RN7SKP283-201ENST00000517197 270 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 RN7SKP256-201ENST00000517201 314 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 AC245166.1-201ENST00000521012 253 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 BNIP3P6-201ENST00000549284 499 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 MIR4742-201ENST00000581069 85 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 AC100830.2-201ENST00000581636 240 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.89□□□□□ -1.79
COL3A1P02461 7SK.7-201ENST00000603504 247 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 BX664608.1-201ENST00000610519 487 ntBASIC3.89□□□□□ -1.79
COL3A1P02461 MIR7973-1-201ENST00000614683 76 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms