Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MTND5P42-201ENST00000637720 498 ntBASIC3.83□□□□□ -1.8
VPS4BO75351 AC066616.2-201ENST00000559334 1481 ntBASIC3.83□□□□□ -1.8
VPS4BO75351 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4BO75351 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS4BO75351 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 AL157700.1-201ENST00000561973 1432 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VPS4BO75351 RNA5SP119-201ENST00000362715 117 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 RNU1-18P-201ENST00000363062 164 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
VPS4BO75351 RNU6-831P-201ENST00000384548 107 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 RNU6-1127P-201ENST00000384580 107 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 Y_RNA.530-201ENST00000384587 101 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 SNORA57.3-201ENST00000411095 141 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AL451054.2-201ENST00000420896 202 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AL353678.1-201ENST00000422735 741 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS4BO75351 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4BO75351 RNU4-49P-201ENST00000516080 140 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 Y_RNA.691-201ENST00000516611 103 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4BO75351 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4BO75351 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS4BO75351 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS4BO75351 MTCO3P23-201ENST00000561363 289 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AC006270.2-201ENST00000578523 652 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 BNIP3P25-201ENST00000596023 559 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4BO75351 AC012468.1-201ENST00000604888 430 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AC092807.2-201ENST00000609367 243 ntBASIC3.82□□□□□ -1.8
VPS4BO75351 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS4BO75351 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4BO75351 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4BO75351 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4BO75351 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4BO75351 DEFB108F-201ENST00000344638 222 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 RNU6-173P-201ENST00000364215 104 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 Y_RNA.378-201ENST00000365652 113 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
VPS4BO75351 AL122016.1-201ENST00000403365 367 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 AL139397.2-201ENST00000404529 772 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 USP9YP20-201ENST00000419224 558 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 NCOR1P3-201ENST00000420479 303 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4BO75351 MRPL50P4-201ENST00000446432 475 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 ANP32BP2-201ENST00000454525 545 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 AC108860.1-201ENST00000484521 383 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4BO75351 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4BO75351 AC103851.1-201ENST00000506833 274 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4BO75351 NDUFB4P9-201ENST00000511646 388 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS4BO75351 RNU6-123P-201ENST00000516163 102 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 RNU6-927P-201ENST00000516199 100 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4BO75351 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4BO75351 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 AC011611.1-201ENST00000552179 197 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 SCOCP1-201ENST00000554676 349 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 RPL23AP84-201ENST00000571193 464 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4BO75351 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4BO75351 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 TPTEP1-208ENST00000636884 213 ntBASIC3.81□□□□□ -1.8
VPS4BO75351 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4BO75351 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
VPS4BO75351 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS4BO75351 CEP170P1-201ENST00000502249 4587 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4BO75351 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 SNORA7.2-201ENST00000364446 145 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4BO75351 Y_RNA.399-201ENST00000383955 105 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 SNORA32.2-201ENST00000384049 122 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RNU4-6P-201ENST00000410804 122 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 RN7SKP140-201ENST00000411196 284 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AC093578.1-201ENST00000415219 368 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4BO75351 HSPE1P1-201ENST00000421494 318 ntBASIC3.8□□□□□ -1.8
VPS4BO75351 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms