Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MIR548AC-201ENST00000585049 88 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC104458.1-201ENST00000608243 463 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 DISC2.1-201ENST00000612827 205 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 DUSP12P1-201ENST00000612874 516 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 SNORD39.4-201ENST00000620099 78 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC005183.1-201ENST00000603687 1979 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 Y_RNA.295-201ENST00000364918 102 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 RN7SKP285-201ENST00000410137 318 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC099548.1-201ENST00000421443 426 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 HMGN2P30-201ENST00000423237 256 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC069285.2-201ENST00000440210 275 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 FGF7P6-202ENST00000451282 293 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AL133162.1-201ENST00000463228 453 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 RNU4-29P-201ENST00000515943 174 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC090151.1-201ENST00000520784 730 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC244505.7-201ENST00000599675 272 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 NRBF2P5-201ENST00000603087 788 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AL356321.1-201ENST00000621360 228 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 MIR6852-201ENST00000621699 66 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 AC010338.1-201ENST00000621823 717 ntBASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC9Q9Y3X0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 Y_RNA.38-201ENST00000362617 102 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 Y_RNA.248-201ENST00000364501 109 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 MIR591-201ENST00000385290 95 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AL354719.1-201ENST00000406535 843 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-1025P-201ENST00000410629 104 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 KCTD9P3-201ENST00000434597 1169 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 HMGB3P8-201ENST00000449709 577 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 snoU13.28-201ENST00000459235 104 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AL117351.2-201ENST00000513571 157 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 SNORD60.2-201ENST00000516883 86 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-711P-201ENST00000517255 106 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 SUMO2P20-201ENST00000520803 283 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 PSMA2P1-201ENST00000526365 646 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AL137161.1-201ENST00000532231 390 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 AC092325.1-201ENST00000566449 554 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 MIR5692A1-201ENST00000580523 69 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 MTND4P35-201ENST00000604257 1375 ntBASIC5.27□□□□□ -1.57
CCDC9Q9Y3X0 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RNY3P3-201ENST00000363816 102 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-270P-201ENST00000364131 105 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 Y_RNA.500-201ENST00000384466 111 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 MIR888-201ENST00000401186 77 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AL136116.1-201ENST00000403591 381 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-1068P-201ENST00000410958 103 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RNU6-193P-201ENST00000410977 107 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AC008264.1-201ENST00000447612 367 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 RPL21P41-201ENST00000459863 264 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 HMGN2P13-201ENST00000476476 274 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 SCARNA14-201ENST00000516903 136 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 MTND4P7-201ENST00000523876 130 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 PHBP17-201ENST00000528576 541 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 AC063950.1-201ENST00000552036 308 ntBASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC9Q9Y3X0 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms