Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 HMGB1P37-201ENST00000439613 609 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC107083.1-201ENST00000439643 279 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC083904.1-201ENST00000487828 231 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 SUB1P1-201ENST00000524415 382 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AP005435.4-201ENST00000529514 284 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC123904.2-201ENST00000548059 300 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC233702.9-201ENST00000581528 203 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AL773545.4-201ENST00000637262 310 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AL513478.4-201ENST00000641636 310 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AL049780.3-201ENST00000624612 1583 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 SNORA20.1-201ENST00000364790 130 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 SNORA20.2-201ENST00000383922 131 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.477-201ENST00000384352 108 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 RNU6-125P-201ENST00000384505 107 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AC002381.1-201ENST00000447049 280 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.682-201ENST00000516457 100 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AC135001.1-201ENST00000544546 283 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AC104695.3-201ENST00000604052 296 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AC006157.1-201ENST00000611750 366 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 Z95331.1-201ENST00000623075 23112 ntBASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL17A1Q9UMD9 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC005592.1-201ENST00000566527 1640 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 BTBD10P2-201ENST00000404779 676 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 MIR548F5-201ENST00000408421 86 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AL590135.1-201ENST00000422215 156 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AP1S2P1-201ENST00000457344 379 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 RPL21P6-201ENST00000479171 504 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 RPL38P4-201ENST00000502376 214 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC006272.2-201ENST00000594725 163 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC104763.2-201ENST00000604179 382 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 PNPT1P2-201ENST00000456768 2050 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 AC010615.1-201ENST00000594254 1764 ntBASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL17A1Q9UMD9 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AL161781.1-201ENST00000354277 403 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RNU6-1115P-201ENST00000362490 106 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RNU6-1188P-201ENST00000363795 107 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RNU6-853P-201ENST00000364306 107 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.270-201ENST00000364693 104 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RNU6-744P-201ENST00000365557 107 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RNU6-1316P-201ENST00000384242 108 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.785-201ENST00000384290 109 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 MIR649-201ENST00000384843 97 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AL136116.1-201ENST00000403591 381 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AL359634.1-202ENST00000404721 284 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AC096632.1-201ENST00000427395 310 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 RPL7P5-201ENST00000471472 736 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AC006445.1-201ENST00000491925 405 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 AL162274.2-201ENST00000614406 332 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 MIR8062-201ENST00000621515 85 ntBASIC5.53□□□□□ -1.52
COL17A1Q9UMD9 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms