Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RPL21P5-201ENST00000554662 472 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RPL23AP84-201ENST00000571193 464 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RPL23AP78-201ENST00000599928 470 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RNU6-87P-201ENST00000607561 108 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AC103710.1-201ENST00000610003 901 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AL158063.1-201ENST00000615349 536 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 Z69908.1-201ENST00000622603 247 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 OR5H6-203ENST00000642105 978 ntBASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CPSF3Q9UKF6 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 FGF7P2-201ENST00000332473 296 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 RNU1-35P-201ENST00000362782 153 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 SNORA80A-201ENST00000363922 136 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 SNORA18.3-201ENST00000384122 132 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 RNU6-198P-201ENST00000384258 104 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 RNU6-1035P-201ENST00000384477 107 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 MIR325-201ENST00000385260 98 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AL031121.1-201ENST00000406553 254 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 RN7SKP58-201ENST00000411010 305 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 HMGN1P14-201ENST00000412459 517 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 ELOCP17-201ENST00000414751 326 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC019097.1-201ENST00000424783 735 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AL022238.1-201ENST00000442557 355 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 MTND2P22-201ENST00000444325 1033 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 Z83846.1-201ENST00000446798 265 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC020550.1-201ENST00000447385 163 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 NIPA2P5-201ENST00000452282 464 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 SSXP1-201ENST00000453640 473 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 SNORA31.21-201ENST00000517180 77 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 CYCSP39-201ENST00000565821 309 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AP005136.1-201ENST00000579765 429 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 LARP7P3-201ENST00000579888 337 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC024153.1-201ENST00000603103 365 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 DPPA3P3-201ENST00000603842 430 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC103710.2-201ENST00000609912 942 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 AC006338.1-201ENST00000618453 749 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 ZNF519P1-201ENST00000449011 1626 ntBASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CPSF3Q9UKF6 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 RNU6-1284P-201ENST00000363701 100 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 SNORD116-1-201ENST00000384335 95 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 RN7SKP142-201ENST00000411236 328 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AL513331.1-201ENST00000411908 397 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 RPS15AP12-201ENST00000419498 388 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 COTL1P1-201ENST00000422309 375 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AL589872.1-201ENST00000426602 288 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC098826.1-201ENST00000433943 471 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC093156.1-201ENST00000440382 670 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 MTND1P12-201ENST00000455231 147 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 RNA5SP269-201ENST00000459032 137 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC091965.2-201ENST00000512324 613 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC093012.1-202ENST00000549403 582 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 BNIP3P8-201ENST00000597863 560 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC091304.9-201ENST00000612091 226 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AL161629.2-201ENST00000615347 275 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC090617.7-201ENST00000623952 126 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC068880.5-201ENST00000624331 290 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC006386.2-201ENST00000624491 75 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AC012005.1-201ENST00000624575 75 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 AL049641.1-201ENST00000441055 1948 ntBASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CPSF3Q9UKF6 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC007785.2-201ENST00000598627 1916 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RNU6-511P-201ENST00000363496 107 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RNU4-91P-201ENST00000364778 135 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RNU6-297P-201ENST00000384636 107 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 237.5 ms