Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU2-36P-201ENST00000410361 191 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU4-65P-201ENST00000410473 140 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 MTND3P8-201ENST00000412909 339 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 DUTP6-201ENST00000425573 462 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC011742.1-201ENST00000431448 434 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 ERLEC1P1-201ENST00000433806 578 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC007967.1-201ENST00000455422 1159 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 SNORA19.2-201ENST00000516013 114 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 Y_RNA.675-201ENST00000516389 149 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU6-1314P-201ENST00000517139 104 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC011611.1-201ENST00000552179 197 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC078814.3-201ENST00000553036 491 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 NCAPGP2-201ENST00000557911 754 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 MIR4424-201ENST00000585257 86 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC012468.1-201ENST00000604888 430 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 AC012443.1-201ENST00000605605 231 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU6-89P-201ENST00000606519 100 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 uc_338.5-201ENST00000611839 155 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 BDP1P-201ENST00000582658 1990 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 IPO8P1-201ENST00000455509 3109 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 MTND4P35-201ENST00000604257 1375 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 ZNF826P-207ENST00000622273 1910 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AP004289.2-201ENST00000444413 1457 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC244517.1-201ENST00000606030 2086 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AP001350.1-201ENST00000601906 1524 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 RN7SKP156-201ENST00000410308 342 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 RNU6-1148P-201ENST00000410992 104 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 SNORA57.3-201ENST00000411095 141 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 TOMM22P1-201ENST00000418578 312 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AL645937.1-202ENST00000421799 937 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 IFNA20P-201ENST00000436840 528 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 MTND1P18-201ENST00000448191 573 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC069499.1-201ENST00000489433 509 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC092436.1-201ENST00000506450 503 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC004062.1-201ENST00000509926 645 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 RNU6-1095P-201ENST00000516148 108 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 RNU7-30P-201ENST00000516835 62 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 SCARNA14-201ENST00000516903 136 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC105029.1-201ENST00000520250 669 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 SUMO2P20-201ENST00000520803 283 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC107953.1-201ENST00000522216 297 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC103843.2-201ENST00000530523 682 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 AC087499.8-201ENST00000578406 226 ntBASIC3.87□□□□□ -1.79
DKK3Q9UBP4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
DKK3Q9UBP4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 TAB3P1-202ENST00000452645 1634 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RNU4-79P-201ENST00000362764 141 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RNU6-552P-201ENST00000362869 119 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 Y_RNA.100-201ENST00000363141 102 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RNU6-179P-201ENST00000363350 107 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 SNORA62.1-201ENST00000364287 154 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RNU6-38P-201ENST00000384085 107 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 Y_RNA.460-201ENST00000384255 102 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 SNORA48.8-201ENST00000391324 134 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 NDUFB4P4-201ENST00000404822 243 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RNA5SP129-201ENST00000410276 118 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 RPL30P2-201ENST00000414021 291 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 AL591419.1-201ENST00000427423 339 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.86□□□□□ -1.79
DKK3Q9UBP4 NOTCH2P1-201ENST00000443481 624 ntBASIC3.86□□□□□ -1.79
DKK3Q9UBP4 AC234775.1-201ENST00000454247 670 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms