Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC87Q9NVE4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 ZNF807-201ENST00000328088 1707 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 PNPT1P2-201ENST00000456768 2050 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 RNU1-44P-201ENST00000384453 163 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 RNU6-95P-201ENST00000384697 107 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 SNORD66.1-201ENST00000391230 76 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.594-201ENST00000410373 140 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 Z99755.1-201ENST00000414048 380 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 UBE2V1P4-201ENST00000425374 344 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 MTCYBP9-201ENST00000431021 303 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 PRDX3P3-201ENST00000447765 522 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 SNORD5.1-201ENST00000458800 75 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.670-201ENST00000516255 105 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 ERHP1-201ENST00000523006 310 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 AL121603.1-201ENST00000553815 142 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 AC120057.2-201ENST00000571520 271 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 AC005255.1-201ENST00000593748 216 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 AC012119.1-201ENST00000603184 222 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 SRGNP1-201ENST00000603392 451 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 7SK.7-201ENST00000603504 247 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 AC092608.2-201ENST00000624427 218 ntBASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 TTK-211ENST00000627129 240 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC87Q9NVE4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC074029.4-201ENST00000624796 1859 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.80-201ENST00000362996 102 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.364-201ENST00000365532 101 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.452-201ENST00000384202 108 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 MIR1271-201ENST00000408537 86 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 Y_RNA.605-201ENST00000410577 105 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC236972.1-201ENST00000433225 199 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 NOTCH2P1-201ENST00000443481 624 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 RPL21P41-201ENST00000459863 264 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC087884.1-201ENST00000469738 328 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC110792.1-201ENST00000491826 472 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 RNU6-470P-201ENST00000515954 104 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 RNU6-764P-201ENST00000516396 105 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 MIR4503-201ENST00000582187 83 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC005899.2-201ENST00000584353 90 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AL160281.1-201ENST00000605307 311 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC019176.2-201ENST00000611579 315 ntBASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC87Q9NVE4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 RNU6-288P-201ENST00000363690 104 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 RNU6-371P-201ENST00000364283 108 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 MIR1302-3-201ENST00000408128 138 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 MIR548F4-201ENST00000408515 105 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 HSPE1P12-201ENST00000412576 301 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 BX842559.1-201ENST00000419615 532 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AL590632.1-201ENST00000424289 371 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 USMG5P1-201ENST00000425964 177 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 RNU7-138P-201ENST00000459479 64 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AP000926.1-201ENST00000479573 241 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 VN1R104P-201ENST00000505115 1009 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 MIR3149-201ENST00000584629 83 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 AL354798.1-201ENST00000622505 329 ntBASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC87Q9NVE4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC87Q9NVE4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms