Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 Y_RNA.259-201ENST00000364619 101 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 Y_RNA.339-201ENST00000365325 102 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 MIR578-201ENST00000384828 96 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 MIR93-201ENST00000385024 80 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 SNORD66.1-201ENST00000391230 76 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP36-201ENST00000410197 133 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL158156.1-201ENST00000422509 473 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 RPS3AP52-201ENST00000435639 297 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 RPS24P13-201ENST00000442520 397 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL360271.2-201ENST00000447710 161 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 FABP5P15-201ENST00000453566 214 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 RPS26P28-201ENST00000470806 348 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 KC877373.1-201ENST00000479066 408 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC026801.1-201ENST00000497178 464 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC006064.5-201ENST00000541782 248 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL121821.2-201ENST00000556081 394 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 FRG2DP-202ENST00000566967 323 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 MIR3690-201ENST00000580266 75 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC093227.2-201ENST00000589357 285 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC073539.2-201ENST00000597113 165 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 MIR7154-201ENST00000620673 73 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 MIR4727-201ENST00000622232 55 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 AL359693.1-201ENST00000614959 2407 ntBASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
TRIM39Q9HCM9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 SNORA63-201ENST00000363450 132 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 DEFB109C-201ENST00000382575 264 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 DEFB109B-201ENST00000382656 264 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RNU6-1025P-201ENST00000410629 104 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 Z82210.1-201ENST00000440037 231 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL353748.1-201ENST00000440753 474 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL359672.1-201ENST00000442302 409 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RPL32P28-201ENST00000443577 397 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 ABCF2P2-201ENST00000450549 296 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RNU7-138P-201ENST00000459479 64 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC117503.1-201ENST00000472241 394 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 MTND5P5-201ENST00000503764 376 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC009901.1-201ENST00000506703 541 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RNU6-1170P-201ENST00000515974 106 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RNA5SP519-201ENST00000516480 119 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RNU6-1332P-201ENST00000516666 104 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 IGLV3-26-201ENST00000520756 302 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 IGKV2D-19-201ENST00000523346 262 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AP003730.1-201ENST00000524605 285 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AP003122.3-201ENST00000526316 255 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AP005639.2-201ENST00000527592 928 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC084851.1-201ENST00000529105 249 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 PARP1P2-201ENST00000556806 195 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 TVP23BP1-201ENST00000557500 617 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 ARF4P1-201ENST00000605447 541 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC002044.1-201ENST00000606707 158 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 FAM157A-202ENST00000615155 405 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 SNORD39.4-201ENST00000620099 78 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 AC005183.1-201ENST00000603687 1979 ntBASIC4.22□□□□□ -1.73
TRIM39Q9HCM9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.21□□□□□ -1.73
TRIM39Q9HCM9 ZNF519P1-201ENST00000449011 1626 ntBASIC4.21□□□□□ -1.73
TRIM39Q9HCM9 FRG1CP-201ENST00000358464 769 ntBASIC4.21□□□□□ -1.74
TRIM39Q9HCM9 MIR383-201ENST00000362257 73 ntBASIC4.21□□□□□ -1.74
TRIM39Q9HCM9 Y_RNA.135-201ENST00000363439 95 ntBASIC4.21□□□□□ -1.74
TRIM39Q9HCM9 SNORA70.2-201ENST00000364506 135 ntBASIC4.21□□□□□ -1.74
TRIM39Q9HCM9 RHOT1P2-201ENST00000366423 333 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms