Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 HMGN2P15-201ENST00000585707 270 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC026741.1-201ENST00000605892 482 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC091946.2-201ENST00000606105 291 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AP000238.1-201ENST00000608759 426 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC005332.10-201ENST00000612725 619 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC007785.2-201ENST00000598627 1916 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP42Q9H9J4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP42Q9H9J4 MIR514A1-201ENST00000385133 98 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USP42Q9H9J4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USP42Q9H9J4 AL590233.1-201ENST00000430017 456 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 MTND2P5-201ENST00000432656 1006 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 SSXP1-201ENST00000453640 473 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 SUMO2P2-201ENST00000456482 255 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC138853.1-201ENST00000503549 823 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 CBX3P4-201ENST00000538909 354 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC007375.1-201ENST00000554513 578 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC087465.1-201ENST00000560574 245 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 MTND4LP5-201ENST00000605152 292 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 AL512598.1-201ENST00000610158 273 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 HPVC1-201ENST00000629899 1198 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USP42Q9H9J4 AC009902.3-201ENST00000606235 2172 ntBASIC2.18□□□□□ -2.06
USP42Q9H9J4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.18□□□□□ -2.06
USP42Q9H9J4 RNU6-549P-201ENST00000384433 107 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 RNU1-57P-201ENST00000384491 166 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR217-201ENST00000384817 110 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 BMI1P1-201ENST00000445879 941 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 OFD1P3Y-201ENST00000453312 783 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 RPL36AP21-201ENST00000490372 323 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC114322.1-201ENST00000506771 926 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 RNA5SP445-201ENST00000515889 115 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 RNU5A-7P-201ENST00000515979 116 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC079148.1-201ENST00000565944 819 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR5694-201ENST00000581190 76 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC090330.1-201ENST00000588646 764 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC100814.1-201ENST00000606963 623 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AL118508.4-201ENST00000624142 1176 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR524-201ENST00000385242 87 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AP000275.1-201ENST00000411943 390 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 MTATP6P27-201ENST00000416987 621 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC007742.1-201ENST00000425789 329 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC007919.1-201ENST00000429380 217 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 ELOCP26-201ENST00000436067 329 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USP42Q9H9J4 TRGVB-201ENST00000453257 471 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 RN7SL274P-201ENST00000492268 272 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 ZNF971P-201ENST00000562068 1249 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC023824.2-201ENST00000566185 400 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR4419B-201ENST00000577260 68 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR4448-201ENST00000584360 86 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC2.17□□□□□ -2.06
USP42Q9H9J4 AP001429.1-201ENST00000602568 530 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 AC004853.1-201ENST00000604902 698 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 BX248123.2-201ENST00000606318 124 ntBASIC2.17□□□□□ -2.06
USP42Q9H9J4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 HMGB1P5-201ENST00000255320 642 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 Y_RNA.116-201ENST00000363292 103 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
USP42Q9H9J4 RNU1-52P-201ENST00000384190 164 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 RNU6-1300P-201ENST00000391046 108 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AL357078.2-201ENST00000416486 427 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AC008850.1-201ENST00000427546 362 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.16□□□□□ -2.06
USP42Q9H9J4 RSL24D1P8-201ENST00000434442 492 ntBASIC2.16□□□□□ -2.06
USP42Q9H9J4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms