Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 Z98742.3-201ENST00000418637 326 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RPS15AP12-201ENST00000419498 388 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RPL21P32-201ENST00000419877 477 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AL353777.1-201ENST00000425552 326 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RPL23AP22-201ENST00000437556 453 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AL049734.2-201ENST00000441066 616 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AL033528.1-201ENST00000453780 140 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RN7SL633P-201ENST00000488974 297 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 NDUFB4P2-201ENST00000509515 391 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 SNORA31.22-201ENST00000517204 135 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 ATP5F1P5-201ENST00000526403 760 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC073544.2-201ENST00000601155 540 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC245517.5-201ENST00000611529 162 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AC010133.1-201ENST00000615809 842 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AL136313.1-201ENST00000624804 202 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 OR4G2P-202ENST00000641004 1759 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 AL136164.4-201ENST00000625013 2135 ntBASIC3.29□□□□□ -1.88
ZNF541Q9H0D2 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 U3.11-201ENST00000364476 212 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RNY4P16-201ENST00000364768 94 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RNY3P13-201ENST00000365542 102 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RNU1-39P-201ENST00000383897 165 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 MIR1289-2-201ENST00000408360 111 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RPS15AP6-201ENST00000420703 385 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 TIMM9P1-201ENST00000436122 256 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 USP9YP15-201ENST00000442391 422 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RNU6-956P-201ENST00000458868 103 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RPS20P20-201ENST00000460498 340 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AL163153.1-201ENST00000554223 283 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC119751.7-201ENST00000600494 245 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 SEPT7P9-203ENST00000604116 343 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AL110115.1-201ENST00000614396 364 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AC025034.2-201ENST00000623264 286 ntBASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.28□□□□□ -1.88
ZNF541Q9H0D2 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RNY4P34-201ENST00000364779 95 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 MIR592-201ENST00000384959 97 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 SNORD115.1-201ENST00000391109 76 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RNU2-8P-201ENST00000410727 190 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 USP12PX-201ENST00000432383 1057 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 SNRPEP4-201ENST00000435815 279 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 MTCO2P16-201ENST00000436962 677 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 MTCO3P45-201ENST00000443036 613 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 MTND1P27-201ENST00000451117 902 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RNA5SP310-201ENST00000459084 116 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC090525.1-201ENST00000479116 478 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC117522.2-201ENST00000510049 657 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC093331.1-201ENST00000521474 169 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 IGKV3-31-201ENST00000523109 329 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC093012.1-202ENST00000549403 582 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 RPL21P5-201ENST00000554662 472 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 NBR2-204ENST00000587322 63 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 SDR42E1P2-201ENST00000614861 481 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC006338.1-201ENST00000618453 749 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC110994.2-201ENST00000635481 492 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AL353746.1-201ENST00000566293 6881 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 AC092593.1-201ENST00000515413 1815 ntBASIC3.27□□□□□ -1.89
ZNF541Q9H0D2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 Y_RNA.77-201ENST00000362962 107 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms