Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 ISCA1P3-201ENST00000577104 373 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 ELOCP29-201ENST00000588193 334 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 NRBF2P5-201ENST00000603087 788 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC007179.3-201ENST00000604976 235 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 Z99289.3-201ENST00000605586 594 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC007038.2-201ENST00000608095 740 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC096577.2-201ENST00000611455 153 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 ATP5A1P2-202ENST00000616464 443 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 U4.3-201ENST00000621047 82 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 AC097655.1-201ENST00000635075 318 ntBASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC54Q8NEL0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 RNU6-461P-201ENST00000364195 107 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 SNORA18.3-201ENST00000384122 132 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 SNORA44-201ENST00000384584 132 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 RNU6-14P-201ENST00000384630 106 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 TXNP7-201ENST00000406296 293 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 MIR1290-201ENST00000408735 78 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 RNU2-33P-201ENST00000410344 192 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 USP9YP20-201ENST00000419224 558 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC007919.1-201ENST00000429380 217 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 UBE2D3P1-201ENST00000436669 444 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 Z82210.1-201ENST00000440037 231 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 MTND5P2-201ENST00000442927 1142 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AL135938.1-201ENST00000443141 297 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC020550.1-201ENST00000447385 163 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 RPL12P25-201ENST00000455592 494 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AP1S2P1-201ENST00000457344 379 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 ELOCP32-201ENST00000548625 324 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AL391261.3-201ENST00000557194 520 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 HMGB1P14-201ENST00000557424 591 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 MIR5694-201ENST00000581190 76 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AF038458.1-201ENST00000588406 262 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC024220.1-201ENST00000603675 484 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 SDR42E1P2-201ENST00000614861 481 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC104454.1-201ENST00000421341 1401 ntBASIC2.24□□□□□ -2.05
CCDC54Q8NEL0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNU6-1072P-201ENST00000384703 107 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNU6-443P-201ENST00000384780 107 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNA5SP210-201ENST00000391034 120 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNA5SP171-201ENST00000391071 115 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL360182.1-201ENST00000397433 468 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL359634.1-202ENST00000404721 284 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL513475.1-201ENST00000406602 315 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL513331.1-201ENST00000411908 397 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RPL21P24-201ENST00000413752 448 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC010099.3-201ENST00000423896 409 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL445687.1-201ENST00000439946 251 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 MTND2P24-201ENST00000453434 806 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RPS20P22-201ENST00000473700 357 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC068587.2-201ENST00000478386 781 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RPS27P27-201ENST00000498779 255 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 Y_RNA.717-201ENST00000517106 92 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RNU6-840P-201ENST00000517275 65 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 IGLV3-17-201ENST00000519099 244 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC068587.4-201ENST00000533893 186 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AP001004.1-201ENST00000582468 324 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 HMGN2P15-201ENST00000585707 270 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC004852.3-201ENST00000614131 326 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC009159.2-201ENST00000617603 606 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AL356266.1-201ENST00000623311 483 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 AC091965.5-201ENST00000624785 342 ntBASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
CCDC54Q8NEL0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms