Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.43□□□□□ -2.02
SKA3Q8IX90 AC104010.1-201ENST00000616889 150 ntBASIC2.43□□□□□ -2.02
SKA3Q8IX90 AC009159.1-201ENST00000618386 642 ntBASIC2.43□□□□□ -2.02
SKA3Q8IX90 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.43□□□□□ -2.02
SKA3Q8IX90 FO624990.1-201ENST00000636373 85 ntBASIC2.43□□□□□ -2.02
SKA3Q8IX90 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.43□□□□□ -2.02
SKA3Q8IX90 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
SKA3Q8IX90 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
SKA3Q8IX90 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
SKA3Q8IX90 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 RNA5SP393-201ENST00000363423 117 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 RNU6-270P-201ENST00000364131 105 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 SNORD21-201ENST00000383953 95 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 RNU1-138P-201ENST00000384093 164 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 MTCYBP36-201ENST00000404146 440 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 RNU2-33P-201ENST00000410344 192 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 Z92545.1-201ENST00000411782 234 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 RPS6P15-201ENST00000431996 751 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 USP12PX-201ENST00000432383 1057 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 CR769767.1-201ENST00000436337 346 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 RPL22P17-201ENST00000438729 315 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL512286.1-201ENST00000439244 400 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 RPS24P13-201ENST00000442520 397 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC020550.1-201ENST00000447385 163 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 snoU13.28-201ENST00000459235 104 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 RPS3AP14-201ENST00000483907 780 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC098862.1-201ENST00000504991 413 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC010486.2-201ENST00000505572 483 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC117522.3-201ENST00000507974 584 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC026407.1-201ENST00000518369 204 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC090888.1-201ENST00000561335 1141 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC068135.2-201ENST00000569293 1028 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 MIR3605-201ENST00000583214 100 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC020895.1-201ENST00000595362 272 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 DPPA3P3-201ENST00000603842 430 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL022161.1-201ENST00000604390 213 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC245517.5-201ENST00000611529 162 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AC122133.1-201ENST00000613964 233 ntBASIC2.42□□□□□ -2.02
SKA3Q8IX90 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
SKA3Q8IX90 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SKA3Q8IX90 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
SKA3Q8IX90 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 MIR6073-201ENST00000352083 89 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 RNU1-112P-201ENST00000364401 164 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL138827.1-201ENST00000402666 306 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 ELOCP17-201ENST00000414751 326 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 MED14P1-201ENST00000430517 648 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC107083.1-201ENST00000439643 279 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 MTND1P30-201ENST00000441241 901 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 ST13P20-201ENST00000447996 1065 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 KATNBL1P6-201ENST00000453433 915 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 SETP11-201ENST00000473027 690 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC103975.1-201ENST00000482506 483 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC112204.1-201ENST00000502591 103 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 MTND5P13-201ENST00000513046 1079 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 SNORA9.3-201ENST00000516383 129 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 RNU6-1282P-201ENST00000516735 96 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 RNU6-201P-201ENST00000517100 61 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC090136.1-201ENST00000520009 240 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC100870.1-201ENST00000522035 505 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.41□□□□□ -2.02
SKA3Q8IX90 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC093012.1-202ENST00000549403 582 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC079600.2-201ENST00000550076 130 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 MIR5697-201ENST00000578045 78 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 MIR3146-201ENST00000580367 79 ntBASIC2.41□□□□□ -2.02
SKA3Q8IX90 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 206.4 ms