Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC090136.1-201ENST00000520009 240 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 AL391156.1-201ENST00000554965 554 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 AP001029.3-201ENST00000588063 596 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 uc_338.25-201ENST00000613756 156 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC138649.3-201ENST00000622154 254 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 AC099506.2-201ENST00000623074 221 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 MIR622-201ENST00000638396 96 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP41Q3LFD5 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP41Q3LFD5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
USP41Q3LFD5 MTND5P26-201ENST00000426018 1752 ntBASIC3.38□□□□□ -1.87
USP41Q3LFD5 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP41Q3LFD5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AL365361.1-201ENST00000566942 3481 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP41Q3LFD5 SNORD56.3-201ENST00000363507 71 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 RNU6-169P-201ENST00000365336 107 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 RNU6-282P-201ENST00000365357 103 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 RNU6-39P-201ENST00000384344 107 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 SNORA44-201ENST00000384584 132 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 SNORD15B-201ENST00000384714 146 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 SNORA11.2-201ENST00000408318 127 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 MTND3P17-201ENST00000416968 344 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 RPL27AP8-201ENST00000424277 446 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC133104.1-201ENST00000429100 218 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 FCF1P1-201ENST00000432690 571 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC009969.1-201ENST00000438726 172 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 C1DP4-201ENST00000455429 424 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC097462.2-201ENST00000504623 481 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 RNU7-51P-201ENST00000516560 62 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 SNORA64.4-201ENST00000516632 81 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 H3F3AP1-201ENST00000559984 334 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 RPL23AP84-201ENST00000571193 464 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC068790.6-201ENST00000602558 258 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC122108.2-201ENST00000611946 526 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC004972.1-201ENST00000623934 2209 ntBASIC3.37□□□□□ -1.87
USP41Q3LFD5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP41Q3LFD5 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.37□□□□□ -1.87
USP41Q3LFD5 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC093010.3-201ENST00000570269 15214 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 Y_RNA.41-201ENST00000362646 102 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RNA5SP295-201ENST00000362655 121 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RN7SKP140-201ENST00000411196 284 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 MTCO1P21-201ENST00000416634 589 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 Z99127.3-201ENST00000448158 395 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 HMGN1P18-201ENST00000457642 277 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RPS20P20-201ENST00000460498 340 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RPS23P3-201ENST00000470993 430 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RPS27AP1-201ENST00000475545 471 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC004924.1-201ENST00000480160 781 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 RNU6-720P-201ENST00000516363 108 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 HMGB1P41-201ENST00000520234 440 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC006504.3-201ENST00000586818 523 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 DPPA3P3-201ENST00000603842 430 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC087241.4-201ENST00000612441 480 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AL110115.1-201ENST00000614396 364 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC013476.2-201ENST00000614456 459 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 ATP5A1P2-202ENST00000616464 443 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 PLCE1P1-201ENST00000622094 305 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 FRG1KP-201ENST00000623592 341 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USP41Q3LFD5 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP41Q3LFD5 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 AC005183.1-201ENST00000603687 1979 ntBASIC3.36□□□□□ -1.87
USP41Q3LFD5 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.36□□□□□ -1.87
USP41Q3LFD5 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms