Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXF1Q12946 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.69□□□□□ -2.14
FOXF1Q12946 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.69□□□□□ -2.14
FOXF1Q12946 AL022578.1-201ENST00000439330 1433 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.69□□□□□ -2.14
FOXF1Q12946 RNU6-28P-201ENST00000362378 107 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 RNU6-621P-201ENST00000364752 109 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXF1Q12946 U3.40-201ENST00000408706 208 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXF1Q12946 BX276092.3-201ENST00000424182 230 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXF1Q12946 THAP5P1-201ENST00000439089 262 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 MTCYBP3-201ENST00000445588 1137 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 BMI1P1-201ENST00000445879 941 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
FOXF1Q12946 WASF1P1-201ENST00000447560 1131 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXF1Q12946 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.69□□□□□ -2.14
FOXF1Q12946 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
FOXF1Q12946 AC147055.4-201ENST00000504399 745 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXF1Q12946 RNU6-928P-201ENST00000516876 104 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 RNA5SP364-201ENST00000516938 78 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 SNORA31.18-201ENST00000517043 134 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXF1Q12946 GLYCAM1-201ENST00000546596 285 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXF1Q12946 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXF1Q12946 OR4K8P-201ENST00000578842 1048 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AC090616.3-201ENST00000582184 217 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXF1Q12946 AL606834.3-201ENST00000602615 496 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AC011451.2-201ENST00000604303 598 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AC005858.4-201ENST00000623191 700 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 AL390862.1-201ENST00000635467 1469 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.69□□□□□ -2.14
FOXF1Q12946 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
FOXF1Q12946 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
FOXF1Q12946 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
FOXF1Q12946 Y_RNA.234-201ENST00000364409 97 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 RNU6-1072P-201ENST00000384703 107 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 RNU6-443P-201ENST00000384780 107 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 MIR583-201ENST00000384846 75 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
FOXF1Q12946 RNU2-40P-201ENST00000410833 196 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 USP9YP11-201ENST00000427537 717 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AL445687.1-201ENST00000439946 251 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AL358794.1-201ENST00000445689 381 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXF1Q12946 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC233279.1-201ENST00000455300 423 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC097493.1-201ENST00000463958 372 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
FOXF1Q12946 SUMO2P5-201ENST00000506790 245 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 MTND4P2-201ENST00000507767 1203 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC093752.1-206ENST00000511823 336 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC124947.2-202ENST00000552735 133 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 OR11H5P-201ENST00000554039 926 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AL132857.1-201ENST00000555180 708 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 ANP32BP3-201ENST00000559213 706 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC068135.2-201ENST00000569293 1028 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
FOXF1Q12946 VN1R83P-201ENST00000595685 445 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AP001429.1-201ENST00000602568 530 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC004987.4-201ENST00000603383 338 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC013553.2-201ENST00000604244 589 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC018645.2-201ENST00000609151 472 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXF1Q12946 AL590099.1-201ENST00000615276 138 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AL121895.2-201ENST00000619558 447 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AP002371.2-201ENST00000624450 503 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXF1Q12946 CENPCP1-201ENST00000533085 2578 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 DDX43P2-201ENST00000604753 1354 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 AC009902.3-201ENST00000606235 2172 ntBASIC1.68□□□□□ -2.14
FOXF1Q12946 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXF1Q12946 AC011477.1-204ENST00000623416 1325 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 RNU5E-10P-201ENST00000363506 118 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 AL590084.1-201ENST00000407885 387 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXF1Q12946 HMGN2P3-201ENST00000433603 273 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 MTCYBP45-201ENST00000435243 565 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 UBE2FP3-201ENST00000436366 524 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 HMGN2P5-201ENST00000436882 273 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXF1Q12946 AC009296.1-201ENST00000443146 155 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.67□□□□□ -2.14
FOXF1Q12946 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.67□□□□□ -2.14
FOXF1Q12946 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXF1Q12946 RNU7-136P-201ENST00000458819 69 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 snoU13.8-201ENST00000458890 104 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 RN7SL274P-201ENST00000492268 272 ntBASIC1.67□□□□□ -2.14
FOXF1Q12946 HMGN1P28-201ENST00000521340 364 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 506.8 ms