Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 RNU6-864P-201ENST00000516256 108 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 Y_RNA.691-201ENST00000516611 103 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC090136.1-201ENST00000520009 240 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD3P31249 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXD3P31249 AL355836.1-201ENST00000555951 870 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 CYP4A43P-201ENST00000568156 121 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 MIR4444-1-201ENST00000581696 74 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 MIR4444-2-201ENST00000584390 74 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 MIR5684-201ENST00000585074 65 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 AL138889.2-201ENST00000603883 242 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC104662.1-201ENST00000604448 511 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AL133255.1-201ENST00000606374 441 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC009570.1-201ENST00000609599 745 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AL359547.2-201ENST00000615810 418 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 MIR7151-201ENST00000617477 60 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC090574.1-201ENST00000623186 233 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 AC016588.2-201ENST00000632484 3021 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXD3P31249 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD3P31249 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXD3P31249 AL137003.2-201ENST00000606924 2538 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AL021368.2-201ENST00000606125 5352 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 RNU6-600P-201ENST00000362524 99 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RNU6-254P-201ENST00000363377 107 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RNU6-82P-201ENST00000363970 107 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RNU6-715P-201ENST00000365204 103 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RPS4XP7-201ENST00000406274 780 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 SNORA11.1-201ENST00000408133 129 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 ARL5AP1-201ENST00000418991 388 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 USP9YP20-201ENST00000419224 558 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 AL669831.1-202ENST00000428504 417 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 AL591212.2-201ENST00000433923 257 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 GTF2IP13-201ENST00000438487 386 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 RPS24P6-201ENST00000452670 400 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 DYNLL1P5-201ENST00000467158 270 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 RPL7P5-201ENST00000471472 736 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 TRBVA-201ENST00000498804 316 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 HMGN1P13-201ENST00000505795 138 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 RNU6-677P-201ENST00000516914 101 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 IGKV2D-23-201ENST00000518179 286 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 IFITM8P-201ENST00000522529 394 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC025627.2-201ENST00000576220 160 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 MIR3690-201ENST00000580266 75 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 SNORD84-203ENST00000584275 78 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 MIR3672-201ENST00000584290 82 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC174048.1-201ENST00000603389 144 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 MIR432-201ENST00000606207 94 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 MIR15A-201ENST00000607334 83 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXD3P31249 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 AC064801.1-201ENST00000612025 407 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 MIR6075-201ENST00000620782 95 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 AL359757.2-201ENST00000624309 274 ntBASIC3.14□□□□□ -1.91
HOXD3P31249 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD3P31249 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms