Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 HMGB1P24-202ENST00000615653 685 ntBASIC5.04□□□□□ -1.6
LIG1P18858 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.04□□□□□ -1.6
LIG1P18858 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG1P18858 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.04□□□□□ -1.6
LIG1P18858 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
LIG1P18858 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG1P18858 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG1P18858 MAPK10-253ENST00000641010 4072 ntBASIC5.03□□□□□ -1.6
LIG1P18858 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
LIG1P18858 MIR1911-201ENST00000410783 80 ntBASIC5.03□□□□□ -1.6
LIG1P18858 RNA5SP104-201ENST00000410989 118 ntBASIC5.03□□□□□ -1.6
LIG1P18858 RNA5SP111-201ENST00000411386 101 ntBASIC5.03□□□□□ -1.6
LIG1P18858 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIG1P18858 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.03□□□□□ -1.6
LIG1P18858 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.03□□□□□ -1.6
LIG1P18858 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.03□□□□□ -1.6
LIG1P18858 NOTCH2P1-201ENST00000443481 624 ntBASIC5.03□□□□□ -1.6
LIG1P18858 ABCF2P2-201ENST00000450549 296 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG1P18858 AC087884.1-201ENST00000469738 328 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG1P18858 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG1P18858 RNU2-58P-201ENST00000516403 183 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG1P18858 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.03□□□□□ -1.6
LIG1P18858 CYP4A43P-201ENST00000568156 121 ntBASIC5.03□□□□□ -1.6
LIG1P18858 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.03□□□□□ -1.6
LIG1P18858 AC005899.2-201ENST00000584353 90 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC011494.1-201ENST00000596454 237 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC092447.9-201ENST00000603395 144 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AL158032.1-201ENST00000605401 106 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AC062037.2-201ENST00000610137 73 ntBASIC5.03□□□□□ -1.6
LIG1P18858 AL359547.2-201ENST00000615810 418 ntBASIC5.03□□□□□ -1.6
LIG1P18858 MIR6130-201ENST00000619419 109 ntBASIC5.03□□□□□ -1.6
LIG1P18858 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.03□□□□□ -1.6
LIG1P18858 AC008725.1-201ENST00000605123 2263 ntBASIC5.03□□□□□ -1.6
LIG1P18858 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG1P18858 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIG1P18858 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.03□□□□□ -1.6
LIG1P18858 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIG1P18858 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 AC139713.2-214ENST00000642059 1811 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG1P18858 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG1P18858 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.02□□□□□ -1.61
LIG1P18858 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 RNA5SP443-201ENST00000363083 132 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RNU1-32P-201ENST00000363937 159 ntBASIC5.02□□□□□ -1.61
LIG1P18858 Y_RNA.257-201ENST00000364596 102 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RNU6-1026P-201ENST00000384465 108 ntBASIC5.02□□□□□ -1.61
LIG1P18858 SNORA41-201ENST00000384675 132 ntBASIC5.02□□□□□ -1.61
LIG1P18858 MIR141-201ENST00000384975 95 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RNU6-821P-201ENST00000390995 107 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RPS20P14-201ENST00000412545 360 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC004552.1-201ENST00000419089 348 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.02□□□□□ -1.61
LIG1P18858 MRPS18BP2-201ENST00000434310 759 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AL359672.1-201ENST00000442302 409 ntBASIC5.02□□□□□ -1.61
LIG1P18858 RPS26P3-201ENST00000470205 348 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC090543.2-201ENST00000483963 348 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC004057.1-201ENST00000485827 348 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC025445.1-201ENST00000502728 300 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG1P18858 AC096745.1-201ENST00000509945 370 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG1P18858 AC104136.1-201ENST00000512969 394 ntBASIC5.02□□□□□ -1.61
LIG1P18858 SCARNA16.2-201ENST00000516520 172 ntBASIC5.02□□□□□ -1.61
LIG1P18858 IFITM8P-201ENST00000522529 394 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG1P18858 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.02□□□□□ -1.61
LIG1P18858 AL161423.1-201ENST00000613700 262 ntBASIC5.02□□□□□ -1.61
LIG1P18858 AP005019.3-201ENST00000620418 560 ntBASIC5.02□□□□□ -1.61
LIG1P18858 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
LIG1P18858 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIG1P18858 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIG1P18858 RNU6-989P-201ENST00000362756 107 ntBASIC5.01□□□□□ -1.61
LIG1P18858 RNU6-214P-201ENST00000384130 107 ntBASIC5.01□□□□□ -1.61
LIG1P18858 MT-TC-201ENST00000387405 66 ntBASIC5.01□□□□□ -1.61
LIG1P18858 U3.22-201ENST00000391120 215 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AL603908.1-201ENST00000406098 201 ntBASIC5.01□□□□□ -1.61
LIG1P18858 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.01□□□□□ -1.61
LIG1P18858 RNU6-101P-201ENST00000410323 104 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AC243428.1-201ENST00000421099 264 ntBASIC5.01□□□□□ -1.61
LIG1P18858 USP9YP30-201ENST00000430729 455 ntBASIC5.01□□□□□ -1.61
LIG1P18858 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.01□□□□□ -1.61
LIG1P18858 AL591212.2-201ENST00000433923 257 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.01□□□□□ -1.61
LIG1P18858 HMGN2P21-201ENST00000447764 270 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AL162591.2-201ENST00000449634 317 ntBASIC5.01□□□□□ -1.61
LIG1P18858 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIG1P18858 RN7SL481P-201ENST00000477764 299 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AC078817.1-201ENST00000492623 435 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AC104564.1-201ENST00000493028 407 ntBASIC5.01□□□□□ -1.61
LIG1P18858 RPL22P13-201ENST00000493291 347 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AC146944.2-203ENST00000502493 354 ntBASIC5.01□□□□□ -1.61
LIG1P18858 AC139495.1-202ENST00000513164 354 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms