Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC024619.4-201ENST00000580924 316 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC011712.1-201ENST00000588959 234 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC044792.1-201ENST00000593294 196 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC012669.1-201ENST00000603209 283 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC004908.2-201ENST00000609090 574 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AL132765.2-201ENST00000610812 351 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC004696.1-201ENST00000614345 607 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 U7.8-201ENST00000619968 63 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 MIR4496-201ENST00000635896 61 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC100810.6-201ENST00000638068 285 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.1□□□□□ -1.91
LMX1BO60663 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
LMX1BO60663 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LMX1BO60663 TNPO1P3-201ENST00000436471 2662 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 MTND4P23-201ENST00000447723 1363 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.1□□□□□ -1.91
LMX1BO60663 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.1□□□□□ -1.91
LMX1BO60663 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LMX1BO60663 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LMX1BO60663 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LMX1BO60663 AC007823.1-201ENST00000569932 1566 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 OR4G1P-203ENST00000641984 1631 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.09□□□□□ -1.91
LMX1BO60663 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
LMX1BO60663 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LMX1BO60663 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
LMX1BO60663 HSPE1P11-201ENST00000339579 310 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.09□□□□□ -1.91
LMX1BO60663 Y_RNA.111-201ENST00000363248 100 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 RNU6-1078P-201ENST00000364522 103 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 RNA5SP267-201ENST00000364893 126 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 RNU5E-6P-201ENST00000365574 115 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
LMX1BO60663 SNORA70E-201ENST00000384492 135 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AL162578.1-201ENST00000406202 378 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 RNU6-373P-201ENST00000411247 98 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.09□□□□□ -1.91
LMX1BO60663 HMGN1P24-201ENST00000412282 298 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AL353678.1-201ENST00000422735 741 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC093019.1-201ENST00000443135 252 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 GAPDHP27-201ENST00000447427 1020 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AL118520.1-201ENST00000450770 291 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.09□□□□□ -1.91
LMX1BO60663 MRPS17P3-201ENST00000465453 385 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 RN7SL601P-201ENST00000471221 293 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC026784.1-201ENST00000507986 352 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.09□□□□□ -1.91
LMX1BO60663 AC105417.1-201ENST00000514691 285 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.09□□□□□ -1.91
LMX1BO60663 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.09□□□□□ -1.91
LMX1BO60663 HMGB1P41-201ENST00000520234 440 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC107953.1-201ENST00000522216 297 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 DEFB108D-201ENST00000527787 222 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 HPRT1P3-201ENST00000539521 576 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC026333.2-201ENST00000542164 106 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC128657.1-201ENST00000549459 145 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.09□□□□□ -1.91
LMX1BO60663 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.09□□□□□ -1.91
LMX1BO60663 MIR4424-201ENST00000585257 86 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC011471.1-201ENST00000585766 187 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.09□□□□□ -1.91
LMX1BO60663 AL034351.1-201ENST00000605288 668 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 AC005000.2-201ENST00000605468 310 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 ASNSP3-201ENST00000451989 1306 ntBASIC3.09□□□□□ -1.91
LMX1BO60663 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.09□□□□□ -1.92
LMX1BO60663 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
LMX1BO60663 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
LMX1BO60663 AL157700.1-201ENST00000561973 1432 ntBASIC3.09□□□□□ -1.92
LMX1BO60663 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
LMX1BO60663 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
LMX1BO60663 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
LMX1BO60663 AC093010.3-201ENST00000570269 15214 ntBASIC3.09□□□□□ -1.92
LMX1BO60663 MTND5P17-201ENST00000418405 1603 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.08□□□□□ -1.92
LMX1BO60663 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
LMX1BO60663 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
LMX1BO60663 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
LMX1BO60663 FRG1CP-201ENST00000358464 769 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AP002088.1-201ENST00000382740 395 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 RNU6-903P-201ENST00000391270 109 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 U3.39-201ENST00000408569 239 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 RNA5SP107-201ENST00000411358 122 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 BX323014.1-201ENST00000412876 237 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 BX842559.1-201ENST00000419615 532 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.08□□□□□ -1.92
LMX1BO60663 AL645937.1-202ENST00000421799 937 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AC097713.2-201ENST00000430199 356 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.08□□□□□ -1.92
LMX1BO60663 MTND3P16-201ENST00000452205 344 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.08□□□□□ -1.92
LMX1BO60663 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.08□□□□□ -1.92
LMX1BO60663 RNU6-1153P-201ENST00000516760 105 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.08□□□□□ -1.92
LMX1BO60663 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.08□□□□□ -1.92
LMX1BO60663 AC093027.1-201ENST00000546698 429 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 CR383656.7-201ENST00000548164 174 ntBASIC3.08□□□□□ -1.92
LMX1BO60663 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.08□□□□□ -1.92
LMX1BO60663 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.08□□□□□ -1.92
LMX1BO60663 MIR4425-201ENST00000580572 84 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms