Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CBX4O00257 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CBX4O00257 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CBX4O00257 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.2□□□□□ -1.74
CBX4O00257 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CBX4O00257 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CBX4O00257 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 RNU1-108P-201ENST00000362556 161 ntBASIC4.2□□□□□ -1.74
CBX4O00257 RNU6-741P-201ENST00000383889 107 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AL356057.2-201ENST00000403318 432 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC074085.1-201ENST00000413598 418 ntBASIC4.2□□□□□ -1.74
CBX4O00257 VN1R36P-201ENST00000414936 291 ntBASIC4.2□□□□□ -1.74
CBX4O00257 RPL21P90-201ENST00000415692 466 ntBASIC4.2□□□□□ -1.74
CBX4O00257 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.2□□□□□ -1.74
CBX4O00257 SAR1AP4-201ENST00000429225 591 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 Y_RNA.632-201ENST00000459189 102 ntBASIC4.2□□□□□ -1.74
CBX4O00257 MTND4P17-201ENST00000470444 350 ntBASIC4.2□□□□□ -1.74
CBX4O00257 RPS26P28-201ENST00000470806 348 ntBASIC4.2□□□□□ -1.74
CBX4O00257 RPL29P14-201ENST00000495837 428 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 PPBPP1-201ENST00000510807 373 ntBASIC4.2□□□□□ -1.74
CBX4O00257 RNU6-566P-201ENST00000516790 107 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.2□□□□□ -1.74
CBX4O00257 MIR4790-201ENST00000577799 79 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.2□□□□□ -1.74
CBX4O00257 MIR4286-201ENST00000580651 93 ntBASIC4.2□□□□□ -1.74
CBX4O00257 MIR4444-1-201ENST00000581696 74 ntBASIC4.2□□□□□ -1.74
CBX4O00257 MIR4444-2-201ENST00000584390 74 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CBX4O00257 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.2□□□□□ -1.74
CBX4O00257 AC007742.2-201ENST00000618226 398 ntBASIC4.2□□□□□ -1.74
CBX4O00257 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.2□□□□□ -1.74
CBX4O00257 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.2□□□□□ -1.74
CBX4O00257 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
CBX4O00257 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.2□□□□□ -1.74
CBX4O00257 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.19□□□□□ -1.74
CBX4O00257 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CBX4O00257 RNU6-371P-201ENST00000364283 108 ntBASIC4.19□□□□□ -1.74
CBX4O00257 Y_RNA.245-201ENST00000364493 95 ntBASIC4.19□□□□□ -1.74
CBX4O00257 SNORA70.4-201ENST00000365509 134 ntBASIC4.19□□□□□ -1.74
CBX4O00257 Y_RNA.480-201ENST00000384364 102 ntBASIC4.19□□□□□ -1.74
CBX4O00257 MIR548F5-201ENST00000408421 86 ntBASIC4.19□□□□□ -1.74
CBX4O00257 RNA5SP239-201ENST00000410218 129 ntBASIC4.19□□□□□ -1.74
CBX4O00257 HSPE1P12-201ENST00000412576 301 ntBASIC4.19□□□□□ -1.74
CBX4O00257 Z85995.1-201ENST00000415547 335 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.19□□□□□ -1.74
CBX4O00257 AC007919.1-201ENST00000429380 217 ntBASIC4.19□□□□□ -1.74
CBX4O00257 FTH1P6-201ENST00000430768 320 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AL358232.1-201ENST00000448030 501 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.19□□□□□ -1.74
CBX4O00257 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.19□□□□□ -1.74
CBX4O00257 RNU6-1069P-201ENST00000516612 133 ntBASIC4.19□□□□□ -1.74
CBX4O00257 Y_RNA.701-201ENST00000516812 110 ntBASIC4.19□□□□□ -1.74
CBX4O00257 RNU6-1088P-201ENST00000516850 104 ntBASIC4.19□□□□□ -1.74
CBX4O00257 SNORA25.17-201ENST00000517184 124 ntBASIC4.19□□□□□ -1.74
CBX4O00257 RNU6-1315P-201ENST00000517187 99 ntBASIC4.19□□□□□ -1.74
CBX4O00257 HPRT1P3-201ENST00000539521 576 ntBASIC4.19□□□□□ -1.74
CBX4O00257 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.19□□□□□ -1.74
CBX4O00257 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.19□□□□□ -1.74
CBX4O00257 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.19□□□□□ -1.74
CBX4O00257 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.19□□□□□ -1.74
CBX4O00257 MIR3672-201ENST00000584290 82 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AC106900.2-201ENST00000604994 317 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.19□□□□□ -1.74
CBX4O00257 AC090132.2-201ENST00000615881 347 ntBASIC4.19□□□□□ -1.74
CBX4O00257 MIR7151-201ENST00000617477 60 ntBASIC4.19□□□□□ -1.74
CBX4O00257 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.19□□□□□ -1.74
CBX4O00257 AC099654.10-201ENST00000640395 161 ntBASIC4.19□□□□□ -1.74
CBX4O00257 AC116096.1-201ENST00000566804 2314 ntBASIC4.19□□□□□ -1.74
CBX4O00257 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.19□□□□□ -1.74
CBX4O00257 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CBX4O00257 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
CBX4O00257 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CBX4O00257 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.18□□□□□ -1.74
CBX4O00257 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.18□□□□□ -1.74
CBX4O00257 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CBX4O00257 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CBX4O00257 AC018529.3-201ENST00000624212 2254 ntBASIC4.18□□□□□ -1.74
CBX4O00257 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CBX4O00257 MIR208A-201ENST00000362287 71 ntBASIC4.18□□□□□ -1.74
CBX4O00257 RN7SKP44-201ENST00000363602 316 ntBASIC4.18□□□□□ -1.74
CBX4O00257 SNORD35B-201ENST00000363660 87 ntBASIC4.18□□□□□ -1.74
CBX4O00257 Y_RNA.212-201ENST00000364177 102 ntBASIC4.18□□□□□ -1.74
CBX4O00257 SNORA4.3-201ENST00000365564 137 ntBASIC4.18□□□□□ -1.74
CBX4O00257 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CBX4O00257 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.18□□□□□ -1.74
CBX4O00257 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.18□□□□□ -1.74
CBX4O00257 GPM6BP2-201ENST00000432046 144 ntBASIC4.18□□□□□ -1.74
CBX4O00257 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.18□□□□□ -1.74
CBX4O00257 GPM6BP1-201ENST00000446387 144 ntBASIC4.18□□□□□ -1.74
CBX4O00257 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.18□□□□□ -1.74
CBX4O00257 RPL21P104-201ENST00000464143 478 ntBASIC4.18□□□□□ -1.74
CBX4O00257 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.18□□□□□ -1.74
CBX4O00257 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.18□□□□□ -1.74
CBX4O00257 RPL7P43-201ENST00000478876 753 ntBASIC4.18□□□□□ -1.74
CBX4O00257 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms