Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.71□□□□□ -2.3
CHKB-CPT1BH3BT56 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-543P-201ENST00000362576 108 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 RNA5SP27-201ENST00000363839 119 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-884P-201ENST00000363889 107 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-741P-201ENST00000383889 107 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR9-3-201ENST00000385084 90 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 PNRC2P1-201ENST00000423940 420 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 HMGN2P3-201ENST00000433603 273 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 HMGN2P5-201ENST00000436882 273 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC098831.1-201ENST00000440661 216 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC025750.2-201ENST00000442609 450 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC092685.1-201ENST00000447960 1243 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 HMGN1P5-201ENST00000448591 263 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC245517.4-201ENST00000448601 281 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC005832.3-201ENST00000537929 631 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC135279.1-201ENST00000543493 504 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC004217.3-201ENST00000551552 878 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR1273D-201ENST00000577266 86 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC010900.2-201ENST00000604508 210 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC116312.1-201ENST00000606841 314 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 uc_338.14-201ENST00000613162 166 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR5739-201ENST00000619803 80 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 AP003485.2-201ENST00000623636 610 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 MTND5P9-201ENST00000503854 1755 ntBASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CHKB-CPT1BH3BT56 ATP8A2P3-201ENST00000426792 1536 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 ZNF355P-201ENST00000427301 3216 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-661P-201ENST00000362409 107 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-251P-201ENST00000363235 104 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR421-201ENST00000365696 85 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 SNORA70.7-201ENST00000384159 133 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR518D-201ENST00000385014 87 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL356057.1-202ENST00000402263 756 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU2-36P-201ENST00000410361 191 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RPL23AP36-201ENST00000413895 458 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC009963.1-201ENST00000417265 157 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 BEND7P1-201ENST00000422058 457 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC233981.1-201ENST00000423224 461 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL160275.3-201ENST00000423876 471 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 Z98742.2-201ENST00000431564 187 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 USP9YP24-201ENST00000434374 697 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 THAP5P1-201ENST00000439089 262 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RPL39P29-201ENST00000447779 157 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RFC5P1-201ENST00000454419 874 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-775P-201ENST00000459318 96 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC117503.1-201ENST00000472241 394 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL049874.1-201ENST00000489560 388 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RPL9P6-201ENST00000492764 598 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 SAP18P1-201ENST00000512058 390 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC022483.1-201ENST00000514020 567 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 RNA5SP182-201ENST00000516064 82 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 HSPE1P18-201ENST00000517602 280 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC090821.2-201ENST00000523552 176 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 NDUFA5P6-201ENST00000542110 379 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 BX322635.1-201ENST00000605804 496 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC093673.2-201ENST00000609674 331 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC007490.1-201ENST00000624321 703 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AL512506.2-201ENST00000624472 458 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 OR4G11P-202ENST00000642116 1414 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC110491.1-201ENST00000562191 2010 ntBASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.69□□□□□ -2.3
CHKB-CPT1BH3BT56 U8.1-201ENST00000362843 134 ntBASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 RNU6-1187P-201ENST00000364771 110 ntBASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 SNORA56-201ENST00000383966 129 ntBASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 RPL37P10-201ENST00000412884 288 ntBASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 TOMM20P4-201ENST00000427861 435 ntBASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.68□□□□□ -2.3
CHKB-CPT1BH3BT56 RPS29P28-201ENST00000446439 141 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms