Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 AP001148.1-201ENST00000624124 2359 ntBASIC5.12□□□□□ -1.59
USP3Q9Y6I4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP3Q9Y6I4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RNU6-173P-201ENST00000364215 104 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.358-201ENST00000365491 99 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RNU6-187P-201ENST00000384139 106 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 MIR153-1-201ENST00000384914 90 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 SNORD78.2-201ENST00000391076 69 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RN7SKP100-201ENST00000411258 284 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AC114755.2-201ENST00000413520 361 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL592148.1-201ENST00000413568 445 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL645608.4-201ENST00000423619 154 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AC006466.1-201ENST00000438721 289 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AC098831.1-201ENST00000440661 216 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RPS20P22-201ENST00000473700 357 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 ANXA2P1-201ENST00000505539 926 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AK3P2-201ENST00000507976 429 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RNU6-255P-201ENST00000516957 105 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 MIR548AI-201ENST00000579940 88 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AC008121.1-201ENST00000603244 268 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 RNF138P2-201ENST00000603490 592 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL161629.2-201ENST00000615347 275 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 SDAD1P1-202ENST00000524156 2051 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.11□□□□□ -1.59
USP3Q9Y6I4 AL139811.1-201ENST00000424779 2299 ntBASIC5.11□□□□□ -1.59
USP3Q9Y6I4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 RNA5SP191-201ENST00000362585 102 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 RNU6-290P-201ENST00000365212 101 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 RNU6-1074P-201ENST00000383995 104 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.541-201ENST00000384640 113 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 U3.30-201ENST00000391308 210 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 LAP3P1-201ENST00000403648 294 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AL033519.2-201ENST00000403958 392 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.623-201ENST00000411128 95 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AL138785.1-201ENST00000425821 331 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 RPL23AP22-201ENST00000437556 453 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC025755.1-201ENST00000521306 278 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AP006245.1-201ENST00000522549 120 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AL121932.1-201ENST00000605542 214 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 AC005046.1-201ENST00000608515 625 ntBASIC5.1□□□□□ -1.59
USP3Q9Y6I4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USP3Q9Y6I4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 AL731532.2-201ENST00000623542 1953 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 NCAPGP1-201ENST00000505112 1814 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.143-201ENST00000363520 106 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.405-201ENST00000383979 100 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.451-201ENST00000384200 100 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 RNU6-125P-201ENST00000384505 107 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.524-201ENST00000384564 100 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 Y_RNA.561-201ENST00000384694 100 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 MIR34A-201ENST00000385130 110 ntBASIC5.09□□□□□ -1.59
USP3Q9Y6I4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms