Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC097714.1-201ENST00000511272 1647 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC079741.1-201ENST00000321498 212 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.2-201ENST00000362330 96 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RNA5SP502-201ENST00000362694 119 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RNU6-61P-201ENST00000365528 109 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RNU6-441P-201ENST00000384545 106 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.518-201ENST00000384552 113 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 GLULP6-201ENST00000399502 913 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AL583834.1-201ENST00000406943 343 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AL023807.1-201ENST00000407932 359 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 Z99755.1-201ENST00000414048 380 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RPL7P37-201ENST00000425095 738 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 UBE2V1P13-201ENST00000436983 439 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RPS15AP27-201ENST00000449183 343 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 SNORD5.1-201ENST00000458800 75 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC011005.2-201ENST00000487324 359 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 RN7SL812P-201ENST00000493791 279 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC068305.1-201ENST00000497406 726 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC146944.2-203ENST00000502493 354 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC139495.1-202ENST00000513164 354 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 MIR5692C1-201ENST00000585309 91 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC005191.1-201ENST00000603950 358 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AC091925.2-201ENST00000625059 256 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 BMS1P21-201ENST00000634565 365 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 AL592148.3-201ENST00000608771 2646 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 OR56B2P-202ENST00000641377 2453 ntBASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
CCDC39Q9UFE4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 TPTE2P4-201ENST00000258589 1605 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC074029.4-201ENST00000624796 1859 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.20-201ENST00000362479 113 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.126-201ENST00000363382 111 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 RNA5SP240-201ENST00000365355 128 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 SNORA24.1-201ENST00000384401 135 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 MIR3065-201ENST00000390137 79 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 RPS16P5-201ENST00000406501 404 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC114491.1-201ENST00000416095 246 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 RPL7AP25-201ENST00000423357 805 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 snoU13.8-201ENST00000458890 104 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC053481.1-201ENST00000467217 306 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC021382.1-201ENST00000483523 359 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC104806.1-201ENST00000508720 308 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 TBCAP3-201ENST00000512475 312 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.703-201ENST00000516846 111 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC040926.1-201ENST00000530195 238 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC084783.1-201ENST00000565846 910 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC130289.1-201ENST00000577321 73 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC012433.1-201ENST00000588916 398 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC104763.2-201ENST00000604179 382 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 MIR6891-201ENST00000618788 93 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 MIR6730-201ENST00000622213 67 ntBASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC39Q9UFE4 AC107081.3-201ENST00000612715 2034 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNVU1-6-201ENST00000364688 164 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNU6-128P-201ENST00000383976 107 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1127P-201ENST00000384580 107 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNU6-306P-201ENST00000384617 107 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 SNORA41-201ENST00000384675 132 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNU2-14P-201ENST00000411053 191 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 BX682237.1-201ENST00000415016 335 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms