Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNA5SP111-201ENST00000411386 101 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 MTND3P8-201ENST00000412909 339 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 SYF2P2-201ENST00000417620 583 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AL035423.1-201ENST00000420331 213 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AL591212.2-201ENST00000433923 257 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC069285.2-201ENST00000440210 275 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 TXNP1-201ENST00000441872 371 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 PRDX3P3-201ENST00000447765 522 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC104058.1-201ENST00000448028 297 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 SCARNA18-201ENST00000459004 134 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 RNU6-1208P-201ENST00000459588 107 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC004801.2-202ENST00000463559 283 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC010469.1-201ENST00000463864 576 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 FAM206BP-201ENST00000510179 541 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 RNU7-30P-201ENST00000516835 62 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 SCOCP1-201ENST00000554676 349 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC006270.2-201ENST00000578523 652 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 MIR4742-201ENST00000581069 85 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC022893.3-201ENST00000607665 437 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC069200.1-201ENST00000609511 323 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AC015813.4-201ENST00000610469 179 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 MIR208A-201ENST00000362287 71 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 SNORA63.1-201ENST00000362493 131 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.167-201ENST00000363735 109 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 SNORD46.1-201ENST00000364139 104 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AL139397.2-201ENST00000404529 772 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC093578.1-201ENST00000415219 368 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 NDUFB4P5-201ENST00000415445 361 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 RPL21P66-201ENST00000426566 466 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 HMGB1P27-201ENST00000431429 603 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AL365400.1-201ENST00000431854 640 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 PRPS1P1-201ENST00000445305 876 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 MRPL50P4-201ENST00000446432 475 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 RPS15AP27-201ENST00000449183 343 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AL121877.1-201ENST00000453704 622 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AP001086.1-201ENST00000494882 321 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.654-201ENST00000497848 106 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 RNU6-927P-201ENST00000516199 100 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 SNORA31.8-201ENST00000516327 108 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC007991.1-201ENST00000522680 631 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 GNRHR2P1-201ENST00000555315 631 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC037471.2-201ENST00000564941 598 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 BNIP3P25-201ENST00000596023 559 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC019176.2-201ENST00000611579 315 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AL391261.4-201ENST00000616012 481 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 MAPK10-372ENST00000641954 3413 ntBASIC3.97□□□□□ -1.77
TDP1Q9NUW8 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.97□□□□□ -1.77
TDP1Q9NUW8 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
TDP1Q9NUW8 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms