Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.7□□□□□ -1.98
LIME1Q9H400 AC093156.1-201ENST00000440382 670 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.7□□□□□ -1.98
LIME1Q9H400 KATNBL1P3-201ENST00000443475 909 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 MTCO1P19-201ENST00000443487 500 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.7□□□□□ -1.98
LIME1Q9H400 RNU6-956P-201ENST00000458868 103 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 snoU109.1-201ENST00000459339 135 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 RPL31P60-201ENST00000478450 367 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC068724.1-201ENST00000487100 792 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 ARL2BPP4-201ENST00000506854 471 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.7□□□□□ -1.98
LIME1Q9H400 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.7□□□□□ -1.98
LIME1Q9H400 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
LIME1Q9H400 RNU6-1256P-201ENST00000516539 103 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.7□□□□□ -1.98
LIME1Q9H400 AP002963.1-201ENST00000530590 184 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.7□□□□□ -1.98
LIME1Q9H400 H3F3AP1-201ENST00000559984 334 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 RPL23AP84-201ENST00000571193 464 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC136601.2-201ENST00000604356 474 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC107294.3-201ENST00000609211 526 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC109347.2-201ENST00000610220 349 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.7□□□□□ -1.98
LIME1Q9H400 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC099506.2-201ENST00000623074 221 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AC090582.1-201ENST00000636321 199 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
LIME1Q9H400 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
LIME1Q9H400 MTND5P27-201ENST00000428871 1720 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 AL136360.1-201ENST00000503377 1900 ntBASIC2.7□□□□□ -1.98
LIME1Q9H400 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LIME1Q9H400 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LIME1Q9H400 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
LIME1Q9H400 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.69□□□□□ -1.98
LIME1Q9H400 OR1S2-201ENST00000302592 978 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LIME1Q9H400 RNU6-348P-201ENST00000384386 107 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RNU6-1197P-201ENST00000391183 107 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RNU2-62P-201ENST00000410868 191 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RN7SKP140-201ENST00000411196 284 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 ZNF90P2-204ENST00000419323 1075 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.69□□□□□ -1.98
LIME1Q9H400 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.69□□□□□ -1.98
LIME1Q9H400 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.69□□□□□ -1.98
LIME1Q9H400 AC010153.1-201ENST00000432862 727 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.69□□□□□ -1.98
LIME1Q9H400 AL353706.1-201ENST00000436728 494 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 MTATP6P30-201ENST00000443540 664 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.69□□□□□ -1.98
LIME1Q9H400 AP000936.2-201ENST00000447151 681 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AC108938.1-201ENST00000451204 136 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.69□□□□□ -1.98
LIME1Q9H400 RPS20P20-201ENST00000460498 340 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 MTND4LP3-201ENST00000468320 276 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 MTND1P3-201ENST00000484956 952 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 TTC39CP1-201ENST00000512513 755 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 SNORA31.3-201ENST00000516029 96 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RNA5SP337-201ENST00000517007 109 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RNU2-46P-201ENST00000517038 113 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 RN7SKP258-201ENST00000517151 304 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AP001804.3-201ENST00000525146 880 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 CASP1P1-201ENST00000526345 212 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AC022690.1-201ENST00000526681 550 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.69□□□□□ -1.98
LIME1Q9H400 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.69□□□□□ -1.98
LIME1Q9H400 HMGB1P6-201ENST00000569046 646 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 MIR3162-201ENST00000581818 82 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 NRBF2P5-201ENST00000603087 788 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 SEPT7P9-203ENST00000604116 343 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AC008277.2-201ENST00000605196 797 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AP000860.1-201ENST00000605250 559 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 AL359757.2-201ENST00000624309 274 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 IGHVIII-44-202ENST00000636235 289 ntBASIC2.69□□□□□ -1.98
LIME1Q9H400 CUL1P1-201ENST00000509510 2425 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LIME1Q9H400 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LIME1Q9H400 RNU6-741P-201ENST00000383889 107 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 SNORA46-201ENST00000384762 135 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 RNU6-278P-201ENST00000390945 109 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 RN7SKP220-201ENST00000410611 288 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 RPL32P35-201ENST00000415214 394 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 RPL7L1P10-201ENST00000427790 463 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 OR2AS1P-201ENST00000427827 319 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC009237.8-201ENST00000445492 379 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 CBWD4P-201ENST00000445695 655 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 GAPDHP17-201ENST00000449858 1001 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 RNA5SP310-201ENST00000459084 116 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AL135752.1-201ENST00000479477 471 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC012181.1-201ENST00000479895 423 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC010587.1-201ENST00000505809 469 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms