| ARAP1 | Q96P48 | Y_RNA.258-201 | ENST00000364613 | 105 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC016769.3-201 | ENST00000396562 | 315 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNU2-40P-201 | ENST00000410833 | 196 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC114763.2-201 | ENST00000412593 | 826 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | EZH2P1-201 | ENST00000431167 | 291 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | UBE2V1P13-201 | ENST00000436983 | 439 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL353764.1-201 | ENST00000442072 | 474 nt | TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL034418.1-201 | ENST00000448675 | 860 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL139109.1-201 | ENST00000455491 | 297 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | TPRKBP1-201 | ENST00000456243 | 481 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | SOX2-OT-207 | ENST00000476964 | 606 nt | TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNA5SP121-201 | ENST00000516537 | 101 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | SNORA31.18-201 | ENST00000517043 | 134 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC023158.1-201 | ENST00000561632 | 1025 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | CBX3P2-202 | ENST00000583365 | 535 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC097372.4-201 | ENST00000625025 | 466 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | MIER3-204 | ENST00000381226 | 5210 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | MIR1303-201 | ENST00000408625 | 86 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | VN1R108P-201 | ENST00000431580 | 830 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | IFNA20P-201 | ENST00000436840 | 528 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC027031.1-201 | ENST00000517318 | 489 nt | TSL 3 BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC117490.2-201 | ENST00000610042 | 594 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | CC2D2B-209 | ENST00000618242 | 980 nt | TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | CFHR3-201 | ENST00000367425 | 1645 nt | APPRIS P1 TSL 1 (best) BASIC | 2.05 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNU1-105P-201 | ENST00000363470 | 161 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNU4ATAC16P-201 | ENST00000408512 | 126 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | LINC01318-201 | ENST00000423593 | 597 nt | TSL 4 BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC006548.1-201 | ENST00000427470 | 102 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RPL7L1P10-201 | ENST00000427790 | 463 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL591212.2-201 | ENST00000433923 | 257 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL645638.1-201 | ENST00000440519 | 361 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNF2P1-201 | ENST00000442955 | 1010 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC009296.1-201 | ENST00000443146 | 155 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC018643.1-201 | ENST00000445459 | 414 nt | TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | LINC02270-201 | ENST00000505386 | 610 nt | TSL 1 (best) BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | ITFG1-AS1-202 | ENST00000565694 | 494 nt | TSL 2 BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC010615.3-201 | ENST00000597319 | 394 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC025588.4-201 | ENST00000615802 | 908 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | CR381572.1-201 | ENST00000625098 | 102 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | ECT2-211 | ENST00000441497 | 2825 nt | APPRIS P2 TSL 1 (best) BASIC | 2.04 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL022578.1-201 | ENST00000439330 | 1433 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | RNU6-234P-201 | ENST00000365229 | 104 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | TRAJ59-201 | ENST00000390480 | 54 nt | APPRIS P1 BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | KCNJ6-AS1-201 | ENST00000435001 | 357 nt | TSL 5 BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | MTCYBP35-201 | ENST00000503630 | 1137 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC105313.1-201 | ENST00000509121 | 353 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC107463.1-202 | ENST00000514526 | 689 nt | TSL 2 BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | LINC01735-201 | ENST00000568112 | 279 nt | TSL 3 BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC098848.1-201 | ENST00000588466 | 567 nt | TSL 4 BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AL031601.2-202 | ENST00000622650 | 282 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AC130650.2-201 | ENST00000618736 | 2403 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| ARAP1 | Q96P48 | AP000648.3-201 | ENST00000623539 | 4507 nt | BASIC | 2.03 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RNU6-203P-201 | ENST00000384038 | 104 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | DSTNP4-201 | ENST00000399472 | 474 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | SSXP10-201 | ENST00000402595 | 565 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RPL7P27-201 | ENST00000403775 | 720 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | IPO7P1-201 | ENST00000442031 | 636 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | LINC01162-201 | ENST00000447262 | 447 nt | TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL662889.1-201 | ENST00000453572 | 389 nt | TSL 3 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL135752.1-201 | ENST00000479477 | 471 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RPS27P21-201 | ENST00000486977 | 252 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | LNCSRLR-201 | ENST00000490375 | 709 nt | TSL 3 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC114322.1-201 | ENST00000506771 | 926 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC009127.3-201 | ENST00000570531 | 403 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC090666.1-201 | ENST00000578241 | 445 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC104365.3-201 | ENST00000587011 | 625 nt | TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC016229.1-201 | ENST00000589242 | 487 nt | TSL 5 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RPS15AP11-201 | ENST00000594193 | 385 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | HSPE1P7-201 | ENST00000604681 | 321 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL445493.3-201 | ENST00000619568 | 477 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | SPAM1-206 | ENST00000460182 | 2154 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | SMARCAD1-206 | ENST00000509418 | 2348 nt | TSL 2 BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC008669.1-201 | ENST00000565823 | 2178 nt | BASIC | 2.02 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RNU4-91P-201 | ENST00000364778 | 135 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RNU6-1074P-201 | ENST00000383995 | 104 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RNU4-72P-201 | ENST00000410754 | 173 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | CFLAR-AS1-201 | ENST00000415011 | 1072 nt | TSL 1 (best) BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL512504.1-201 | ENST00000415494 | 778 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | DYNLL1P5-201 | ENST00000467158 | 270 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | ZBTB20-AS2-201 | ENST00000478301 | 372 nt | TSL 2 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC022493.1-201 | ENST00000492984 | 337 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC093879.2-201 | ENST00000513645 | 427 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC092470.1-201 | ENST00000546187 | 132 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC012378.1-201 | ENST00000561155 | 364 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL590095.2-201 | ENST00000604136 | 117 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC073413.2-201 | ENST00000604332 | 360 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | BNIP3P7-201 | ENST00000605641 | 516 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL109933.3-201 | ENST00000619095 | 188 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL354685.2-201 | ENST00000448218 | 1447 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL359851.1-201 | ENST00000569460 | 4997 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | OR5AK2-201 | ENST00000326855 | 996 nt | APPRIS P1 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL355497.1-201 | ENST00000406262 | 551 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | RN7SKP51-201 | ENST00000410781 | 304 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC007560.1-201 | ENST00000426912 | 237 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL592161.1-201 | ENST00000456389 | 861 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AC025871.1-202 | ENST00000518819 | 432 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | LY96-202 | ENST00000518893 | 430 nt | TSL 3 BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | MIR3117-201 | ENST00000584034 | 78 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | AL020996.3-201 | ENST00000606617 | 222 nt | BASIC | 2.01 | □□□□□ -2.09 | | |
| ARAP1 | Q96P48 | UCA1.1-201 | ENST00000620952 | 75 nt | BASIC | 2.01 | □□□□□ -2.09 | | |