Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD1Q96NR3 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD1Q96NR3 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.476-201ENST00000384347 108 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RNU6-1179P-201ENST00000384667 107 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.556-201ENST00000384677 113 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RNU6-823P-201ENST00000391042 103 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RNA5SP332-201ENST00000391063 115 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC097374.1-203ENST00000400783 485 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RNU2-3P-201ENST00000410144 191 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 CYCSP33-201ENST00000414485 327 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AL353621.1-201ENST00000418219 243 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 UBE2D3P2-201ENST00000424409 445 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RPS12P10-201ENST00000427031 377 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 HSPD1P21-201ENST00000436541 245 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 ISCUP1-201ENST00000454451 448 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AL353752.1-201ENST00000454946 260 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC087588.1-201ENST00000462203 316 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC006463.2-201ENST00000473326 348 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RN7SL459P-201ENST00000481078 302 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 RN7SL283P-201ENST00000489055 303 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC008716.1-201ENST00000511084 513 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC134698.5-201ENST00000519444 336 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC093227.2-201ENST00000589357 285 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC100812.1-201ENST00000607622 580 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 SNORD39.4-201ENST00000620099 78 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC025031.4-201ENST00000621248 3271 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
PTCHD1Q96NR3 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AL365440.1-201ENST00000436135 2167 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.324-201ENST00000365165 102 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.424-201ENST00000384063 103 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AL030996.1-201ENST00000411430 235 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RPS12P23-201ENST00000419579 400 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC068287.1-201ENST00000430283 295 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RPS26P2-201ENST00000440331 348 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RANP8-201ENST00000444720 713 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC112492.4-201ENST00000456549 352 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 snoU13.1-201ENST00000459157 104 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC010655.3-201ENST00000478818 450 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RNU6-143P-201ENST00000516942 93 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RNA5SP471-201ENST00000516971 106 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 HSBP1P1-201ENST00000555205 166 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RNA5SP108-201ENST00000605921 117 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AL591516.1-201ENST00000611326 274 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AP005019.3-201ENST00000620418 560 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 MFSD8-216ENST00000641147 4009 ntBASIC4.3□□□□□ -1.72
PTCHD1Q96NR3 SDAD1P2-201ENST00000441308 2028 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms