Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC43Q96MW1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC43Q96MW1 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
CCDC43Q96MW1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 MIR34A-201ENST00000385130 110 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AL139039.1-201ENST00000401900 692 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AL139397.2-201ENST00000404529 772 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AL008987.1-201ENST00000415528 237 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 VPS26BP1-201ENST00000417155 755 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC005094.1-201ENST00000440420 368 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AP000936.2-201ENST00000447151 681 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 RNU6-826P-201ENST00000516827 104 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 RNU6-64P-201ENST00000517119 105 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC061975.8-201ENST00000587058 721 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC245884.10-201ENST00000597355 337 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AP000787.2-201ENST00000604432 568 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC103710.1-201ENST00000610003 901 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC013562.2-201ENST00000611632 603 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC022960.3-201ENST00000619794 441 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 AC068057.2-201ENST00000624047 895 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.95□□□□□ -1.94
CCDC43Q96MW1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC43Q96MW1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 MAPK10-266ENST00000641066 6555 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 RNU6-1167P-201ENST00000363227 94 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 RNU1-109P-201ENST00000383960 147 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL513475.1-201ENST00000406602 315 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 HMGB1P11-201ENST00000413899 637 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 MTND1P28-201ENST00000435623 950 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 RPL21P2-201ENST00000440049 481 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 RPL7P36-201ENST00000444633 681 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 SCARNA17.1-201ENST00000516211 143 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 SCARNA17.2-201ENST00000516334 143 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC100870.1-201ENST00000522035 505 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 COX6CP5-201ENST00000527162 228 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC068587.4-201ENST00000533893 186 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL359212.1-201ENST00000556608 614 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AL031281.1-201ENST00000604049 488 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 SCARNA17.4-201ENST00000614296 143 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC43Q96MW1 AC006378.2-201ENST00000623178 2476 ntBASIC2.94□□□□□ -1.94
CCDC43Q96MW1 MTND4P16-201ENST00000466108 1367 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 Y_RNA.111-201ENST00000363248 100 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 RNU6-461P-201ENST00000364195 107 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 RNU6-278P-201ENST00000390945 109 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL356057.3-201ENST00000402607 340 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL359634.1-202ENST00000404721 284 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 RNU2-25P-201ENST00000411041 191 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 BPY2DP-201ENST00000422208 265 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 TPT1P8-201ENST00000510120 555 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 RNA5SP165-201ENST00000517142 115 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 RN7SKP258-201ENST00000517151 304 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC087276.1-201ENST00000529659 480 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC006023.1-201ENST00000603944 259 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC091965.4-201ENST00000607691 587 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 CR381653.2-201ENST00000624041 768 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 AC091965.5-201ENST00000624785 342 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms