Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC011978.2-201ENST00000569835 2054 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 MTCO1P24-201ENST00000515438 1558 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNY4P16-201ENST00000364768 94 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNU4-66P-201ENST00000365199 138 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNU6-1013P-201ENST00000384180 107 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 Y_RNA.530-201ENST00000384587 101 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 SNORA19-201ENST00000384737 128 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 MIR93-201ENST00000385024 80 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNU2-37P-201ENST00000410695 177 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 BX323014.1-201ENST00000412876 237 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 SKA2P1-201ENST00000425592 390 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC119618.1-201ENST00000434191 222 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC079781.2-201ENST00000446424 169 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 snoU13.7-201ENST00000459220 104 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC128713.1-201ENST00000471495 306 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RPL29P14-201ENST00000495837 428 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC093853.1-201ENST00000515689 483 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 SNORD27.1-201ENST00000516319 72 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RN7SKP219-201ENST00000516825 296 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNU6-410P-201ENST00000517006 107 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNA5SP337-201ENST00000517007 109 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 RNU6-1213P-201ENST00000517075 94 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 IGLV3-26-201ENST00000520756 302 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC007991.1-201ENST00000522680 631 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AP005435.4-201ENST00000529514 284 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC103843.2-201ENST00000530523 682 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 IMMP1LP2-201ENST00000552954 492 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AL118558.2-201ENST00000556294 238 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC113195.1-201ENST00000579952 141 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 SNORA51-201ENST00000606420 132 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CR381572.1-201ENST00000625098 102 ntBASIC4.12□□□□□ -1.75
CHFRQ96EP1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.12□□□□□ -1.75
CHFRQ96EP1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CHFRQ96EP1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 CDC27P3-201ENST00000635418 1910 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 RNA5SP119-201ENST00000362715 117 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 SNORD35B-201ENST00000363660 87 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RNY1P12-201ENST00000364251 105 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 Y_RNA.364-201ENST00000365532 101 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RHOT1P2-201ENST00000366423 333 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 Y_RNA.512-201ENST00000384518 102 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RNU6-310P-201ENST00000384655 107 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 Y_RNA.556-201ENST00000384677 113 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 SDAD1P3-201ENST00000427380 333 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 AL590399.6-201ENST00000446396 307 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC002381.1-201ENST00000447049 280 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RPL36AP13-201ENST00000457490 317 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RN7SL323P-201ENST00000494712 295 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RNU7-143P-201ENST00000516781 65 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 RNU6-566P-201ENST00000516790 107 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 SCARNA14-201ENST00000516903 136 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC087499.8-201ENST00000578406 226 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 MIR5690-201ENST00000583739 73 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 MIR4424-201ENST00000585257 86 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 BNIP3P25-201ENST00000596023 559 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC008739.3-201ENST00000603262 127 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AL022099.1-201ENST00000604551 712 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 U2.1-201ENST00000618978 145 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 AL161912.2-201ENST00000565707 3007 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.11□□□□□ -1.75
CHFRQ96EP1 AC092125.1-201ENST00000562568 1995 ntBASIC4.11□□□□□ -1.75
CHFRQ96EP1 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHFRQ96EP1 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHFRQ96EP1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.1□□□□□ -1.75
CHFRQ96EP1 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms