Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL356867.1-201ENST00000429623 299 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 UBE2V1P13-201ENST00000436983 439 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 USP9YP22-201ENST00000438971 294 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC092427.1-201ENST00000439177 601 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 FGF7P5-201ENST00000441829 291 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 RPS15AP27-201ENST00000449183 343 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 OFD1P3Y-201ENST00000453312 783 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC025033.1-201ENST00000463883 194 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC107626.1-201ENST00000471084 183 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 HMGB3P3-201ENST00000510526 400 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC007115.1-201ENST00000546853 234 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC126365.2-201ENST00000580630 379 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC068790.3-201ENST00000602988 553 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC024060.1-201ENST00000607052 494 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL512427.1-201ENST00000618593 349 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 OR5H6-203ENST00000642105 978 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC107982.1-201ENST00000507171 1300 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 SNRPEP2-201ENST00000397592 279 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 Z85995.1-201ENST00000415547 335 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 Z75741.2-201ENST00000417272 1167 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC007435.1-201ENST00000421086 415 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 COX6CP12-201ENST00000446748 202 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 NDUFB4P2-201ENST00000509515 391 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 RNU1-40P-201ENST00000516816 164 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 RNU1-97P-201ENST00000516872 164 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AL022067.1-201ENST00000602426 454 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC016727.1-205ENST00000605437 569 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 MIR6130-201ENST00000619419 109 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC090772.4-201ENST00000623599 362 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC073308.1-201ENST00000623696 305 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AC126544.2-201ENST00000625174 749 ntBASIC1.85□□□□□ -2.11
LMX1AQ8TE12 AL049641.1-201ENST00000441055 1948 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 RNU1-52P-201ENST00000384190 164 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 Y_RNA.548-201ENST00000384656 105 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 U3.20-201ENST00000390909 217 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 RPS3AP24-201ENST00000407896 734 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AC068533.2-201ENST00000411872 306 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 MTCO2P5-201ENST00000422621 426 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 WARS2P1-201ENST00000429678 537 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 MTCYBP45-201ENST00000435243 565 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 DPPA3P1-201ENST00000448050 469 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 RPL23AP7-203ENST00000449021 469 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AL139109.1-201ENST00000455491 297 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 FAM172BP-201ENST00000487497 1089 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 GTF2IP9-201ENST00000502460 301 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AC008427.1-201ENST00000503102 655 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 MTCYBP17-201ENST00000503579 789 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AC114981.1-201ENST00000503897 678 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.84□□□□□ -2.11
LMX1AQ8TE12 AC006499.2-201ENST00000513470 337 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 RNU6-1225P-201ENST00000516336 65 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 Y_RNA.676-201ENST00000516393 96 ntBASIC1.84□□□□□ -2.11
LMX1AQ8TE12 RNU6-928P-201ENST00000516876 104 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms