Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC008885.2-201ENST00000509506 930 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AL132857.1-201ENST00000555180 708 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 DUXAP10-204ENST00000612052 616 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC022513.1-201ENST00000624512 117 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MIR7157-201ENST00000635801 60 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 Z98749.2-208ENST00000381646 500 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 RNU2-21P-201ENST00000410368 188 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC010385.1-201ENST00000412374 256 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 IFNA20P-201ENST00000436840 528 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 DUXAP8-207ENST00000456786 622 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MIR151B-201ENST00000584249 96 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 FRG1HP-204ENST00000617940 757 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MIR6086-201ENST00000638065 55 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 OR1L1-202ENST00000373686 1083 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 RNU6-1080P-201ENST00000383982 107 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MTATP6P7-201ENST00000453315 681 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC023424.2-201ENST00000493479 777 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 PCNAP1-201ENST00000505363 709 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MIR3616-201ENST00000584070 92 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.47□□□□□ -2.33
SYNE1Q8NF91 AC007342.9-201ENST00000623877 1385 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 SEC63P2-201ENST00000503863 1939 ntBASIC0.47□□□□□ -2.33
SYNE1Q8NF91 MIR493-201ENST00000385254 89 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 SNORD56-201ENST00000413522 71 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC005297.2-201ENST00000450430 606 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RPS20P24-201ENST00000457473 361 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 MIR5000-201ENST00000577717 103 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 GLUD1P4-201ENST00000590914 418 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AP003400.5-201ENST00000624827 617 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNU6-492P-201ENST00000363035 104 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 Y_RNA.115-201ENST00000363272 98 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RN7SKP51-201ENST00000410781 304 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL133384.1-201ENST00000412744 351 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC096649.2-201ENST00000416186 393 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 GTF2IP7-202ENST00000436677 309 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RPS15AP34-201ENST00000487776 387 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 MTCYBP18-201ENST00000501056 747 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 FAM60BP-201ENST00000578364 658 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC007349.4-201ENST00000608114 532 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNU4-13P-201ENST00000364019 141 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNU6-1074P-201ENST00000383995 104 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 ANAPC10P1-201ENST00000395991 556 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNU6-272P-201ENST00000411028 104 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNA5SP127-201ENST00000411051 133 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL645638.1-201ENST00000440519 361 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 CALM1P1-201ENST00000442082 433 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RPL23AP33-201ENST00000442301 452 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL096803.2-201ENST00000450032 677 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC034244.1-201ENST00000507687 207 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 COL6A4P2-205ENST00000509855 506 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 RNA5SP395-201ENST00000516567 118 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC079610.2-201ENST00000604818 690 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 HMGB1P5-201ENST00000255320 642 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 MIR649-201ENST00000384843 97 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AC006548.1-201ENST00000427470 102 ntBASIC0.46□□□□□ -2.34
SYNE1Q8NF91 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC0.46□□□□□ -2.34
SYNE1Q8NF91 AL589880.1-201ENST00000448271 287 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms