Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 RNU6-1097P-201ENST00000363586 107 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MIR558-201ENST00000384920 94 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AP000567.1-201ENST00000406413 156 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 UBE2D3P2-201ENST00000424409 445 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MED13P1-201ENST00000428342 171 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 TAAR7P-201ENST00000436141 242 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 NDUFB4P6-201ENST00000436819 366 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC132479.1-201ENST00000449160 144 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MTND2P24-201ENST00000453434 806 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 RPS3AP17-201ENST00000472594 777 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 RNU6-927P-201ENST00000516199 100 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AP001804.3-201ENST00000525146 880 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC022080.3-201ENST00000544433 482 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AL845331.3-202ENST00000562856 261 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MIR5004-201ENST00000579078 107 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC073534.2-201ENST00000620377 381 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC084035.1-201ENST00000634543 607 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC073343.1-201ENST00000328239 651 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 MIR493-201ENST00000385254 89 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 SNORD17-201ENST00000390930 237 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 GSTA9P-201ENST00000406231 611 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AL591034.1-201ENST00000407447 340 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 DBIP2-201ENST00000419076 262 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AL158071.1-201ENST00000430315 461 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 MTCO2P11-201ENST00000431069 680 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 FCF1P1-201ENST00000432690 571 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 NDUFB1P1-201ENST00000435191 180 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 CBWD4P-201ENST00000445695 655 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC079781.2-201ENST00000446424 169 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 SNRPGP6-201ENST00000451124 220 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC013267.1-201ENST00000458227 267 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 RPS23P3-201ENST00000470993 430 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC023598.1-201ENST00000472521 361 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 RPL31P60-201ENST00000478450 367 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC022880.1-201ENST00000534017 973 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AL022154.1-201ENST00000604698 785 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AL390240.1-201ENST00000612950 384 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC138649.3-201ENST00000622154 254 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 AC068880.5-201ENST00000624331 290 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.35□□□□□ -1.87
COL28A1Q2UY09 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL28A1Q2UY09 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 MIR422A-201ENST00000362286 90 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNU6-181P-201ENST00000363225 107 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 Y_RNA.505-201ENST00000384489 102 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 NDUFS5P1-201ENST00000405668 289 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNA5SP293-201ENST00000410527 113 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 Z85995.1-201ENST00000415547 335 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AL358934.1-201ENST00000432346 324 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 GPR143P-201ENST00000434155 205 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 MTATP6P30-201ENST00000443540 664 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC009237.8-201ENST00000445492 379 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC087588.1-201ENST00000462203 316 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AP002884.2-201ENST00000471647 395 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RPL30P5-201ENST00000494923 336 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms