Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.43□□□□□ -2.02
SHHQ15465 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.43□□□□□ -2.02
SHHQ15465 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.43□□□□□ -2.02
SHHQ15465 AC012443.1-201ENST00000605605 231 ntBASIC2.43□□□□□ -2.02
SHHQ15465 snoU13.31-201ENST00000607291 104 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AL607023.1-201ENST00000620045 248 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AC139792.2-201ENST00000624218 587 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AC091965.5-201ENST00000624785 342 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AC091925.2-201ENST00000625059 256 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AC092192.1-201ENST00000633154 1018 ntBASIC2.43□□□□□ -2.02
SHHQ15465 MIR3974-201ENST00000637126 96 ntBASIC2.43□□□□□ -2.02
SHHQ15465 AC097714.1-201ENST00000511272 1647 ntBASIC2.42□□□□□ -2.02
SHHQ15465 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
SHHQ15465 RNU6-413P-201ENST00000384115 107 ntBASIC2.42□□□□□ -2.02
SHHQ15465 SNORA17.3-201ENST00000391159 129 ntBASIC2.42□□□□□ -2.02
SHHQ15465 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SHHQ15465 FGF7P8-201ENST00000402994 292 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL590004.2-201ENST00000404787 371 ntBASIC2.42□□□□□ -2.02
SHHQ15465 RNU6-1140P-201ENST00000410517 106 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 AL136133.1-201ENST00000413694 376 ntBASIC2.42□□□□□ -2.02
SHHQ15465 BX682237.1-201ENST00000415016 335 ntBASIC2.42□□□□□ -2.02
SHHQ15465 RPL7P30-201ENST00000420888 709 ntBASIC2.42□□□□□ -2.02
SHHQ15465 RPL27AP8-201ENST00000424277 446 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 GTF2IP7-202ENST00000436677 309 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 MTND2P4-201ENST00000445034 1004 ntBASIC2.42□□□□□ -2.02
SHHQ15465 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 AL359385.1-201ENST00000456509 365 ntBASIC2.42□□□□□ -2.02
SHHQ15465 MTCO1P42-201ENST00000457379 726 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.42□□□□□ -2.02
SHHQ15465 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 RPL9P33-201ENST00000484311 566 ntBASIC2.42□□□□□ -2.02
SHHQ15465 LINC00888-204ENST00000487386 421 ntBASIC2.42□□□□□ -2.02
SHHQ15465 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.42□□□□□ -2.02
SHHQ15465 RNU5A-4P-201ENST00000516588 111 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 OR4P1P-201ENST00000530808 1136 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.42□□□□□ -2.02
SHHQ15465 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 AC008127.2-201ENST00000549925 1075 ntBASIC2.42□□□□□ -2.02
SHHQ15465 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.42□□□□□ -2.02
SHHQ15465 DUXAP1-201ENST00000556632 463 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC090888.1-201ENST00000561335 1141 ntBASIC2.42□□□□□ -2.02
SHHQ15465 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.42□□□□□ -2.02
SHHQ15465 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.42□□□□□ -2.02
SHHQ15465 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.42□□□□□ -2.02
SHHQ15465 AP001981.2-201ENST00000603241 418 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.6-201ENST00000603753 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.11-201ENST00000604059 253 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.10-201ENST00000604330 253 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC008162.1-201ENST00000604718 254 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.1-201ENST00000604752 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.2-201ENST00000604983 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC106900.2-201ENST00000604994 317 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.5-201ENST00000605253 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.4-201ENST00000605279 254 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.12-201ENST00000605291 253 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.8-201ENST00000605353 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.9-201ENST00000605428 253 ntBASIC2.42□□□□□ -2.02
SHHQ15465 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.42□□□□□ -2.02
SHHQ15465 AL670379.7-201ENST00000605823 252 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC067747.1-201ENST00000608026 250 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC245517.5-201ENST00000611529 162 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC007490.1-201ENST00000624321 703 ntBASIC2.42□□□□□ -2.02
SHHQ15465 CYP3A51P-201ENST00000633513 256 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC007671.2-201ENST00000637344 619 ntBASIC2.42□□□□□ -2.02
SHHQ15465 AC103706.2-201ENST00000638080 240 ntBASIC2.42□□□□□ -2.02
SHHQ15465 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SHHQ15465 AC087359.1-201ENST00000508335 1740 ntBASIC2.42□□□□□ -2.02
SHHQ15465 MTCO1P23-201ENST00000415223 1526 ntBASIC2.42□□□□□ -2.02
SHHQ15465 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.41□□□□□ -2.02
SHHQ15465 AP000776.1-201ENST00000530032 1663 ntBASIC2.41□□□□□ -2.02
SHHQ15465 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
SHHQ15465 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHHQ15465 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.41□□□□□ -2.02
SHHQ15465 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.41□□□□□ -2.02
SHHQ15465 CD24P4-201ENST00000382840 243 ntBASIC2.41□□□□□ -2.02
SHHQ15465 MIR489-201ENST00000384923 84 ntBASIC2.41□□□□□ -2.02
SHHQ15465 RNU2-42P-201ENST00000410697 113 ntBASIC2.41□□□□□ -2.02
SHHQ15465 AC068533.2-201ENST00000411872 306 ntBASIC2.41□□□□□ -2.02
SHHQ15465 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.41□□□□□ -2.02
SHHQ15465 AL096701.2-201ENST00000416920 238 ntBASIC2.41□□□□□ -2.02
SHHQ15465 Z75741.2-201ENST00000417272 1167 ntBASIC2.41□□□□□ -2.02
SHHQ15465 TMEM167AP1-201ENST00000423409 219 ntBASIC2.41□□□□□ -2.02
SHHQ15465 AL353729.1-201ENST00000425044 720 ntBASIC2.41□□□□□ -2.02
SHHQ15465 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.41□□□□□ -2.02
SHHQ15465 AC092427.1-202ENST00000430569 476 ntBASIC2.41□□□□□ -2.02
SHHQ15465 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.41□□□□□ -2.02
SHHQ15465 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.41□□□□□ -2.02
SHHQ15465 AC118469.1-201ENST00000442943 488 ntBASIC2.41□□□□□ -2.02
SHHQ15465 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.41□□□□□ -2.02
SHHQ15465 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.41□□□□□ -2.02
SHHQ15465 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.41□□□□□ -2.02
SHHQ15465 AC069528.1-202ENST00000482888 637 ntBASIC2.41□□□□□ -2.02
SHHQ15465 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms